Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3237 ATGGAGCTAACTACAGGAGGTTCCACTGGGTTCAGTCTCACTGGTGAACGCGATCGGGCCGCACTTGAATCCGTTCAATTCAACGAGGAAATCGCGCGAATCATAGCCCCGGCCCCAGAAAATCTTAGCTCGTTCACTGCACTTCTCGAACTCCCCGCAGCGCAGGCCAAGGAGATCCTCCGCTCGCCCAACTCTGACAGAGCCGCCGCGGTGATCCGCGCCTTCGGGGAACCCTTGAGCCATATCAATGATCAGAAACCCCACAGATTTCATTCTTTCAGTGACACCTTTAGACTCCCTTCCAACACTGCTTTGATCGAACGCTCCGCTAAGCTTTCCGTATTTGCTGAAGAAAACTCGTCACCGGAGGAGGCCAACTTGGCTCCACTTAGTTCACGAGCAAATTTAAACAGAGTGAAGCATGAACCCCCGGAAACCGATTCAAATCCGAAGTCCACCTCTATTATCGCCTCTAACCCCCCGATTGAGAACAAGAACGAGAGGGCCGCAAAGAGGAAGGAACGAGAGAAGAAGGATAAAGAATCCTCGAAGAAGAGTAGAAGCGTCGCCGAAGAAACATCCGGAGACGGAGAGAAACTTCCATACATTCATGTTCGAGCTCGTCGCGGTCAGGCTACAGACAGCCATAGCTTAGCAGAAAGGGCCAGGAGAGAGAAAATTAACGCCCGTATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCGATAAGATTTCAGGAACAGCGTTAGTTCTGGATGAAATCATCAACCATGTTCAATCTCTTCAACGTCAAGTGGAGTTCTTGTCAATGAAACTAGCAGCAGTTAGCCCAAGAATTGATTTCGACCTTGACAGCATATTGGCCGCCGAAGGTGCATCTCGAGTGGACTGCAACTTCCCCGACATGGTTACAGAGCCAGTGTGGAAGGAAGTTCCAGACAACGGAAATAGACAGCAATATCAACAACAGTGGCAATTGGATGCATTCACCCAACCGATTTGGGGAAGGGAAGAAGAGAACCGGAATTTCATGACCCCAGAATACTCTCTCTTGAGTTATGACTCGTTGGCAAATTCAGCCTCTCTGCAGCCAAATCATTTGAAGATGGAGATGTGA 1116 0.4982 MELTTGGSTGFSLTGERDRAALESVQFNEEIARIIAPAPENLSSFTALLELPAAQAKEILRSPNSDRAAAVIRAFGEPLSHINDQKPHRFHSFSDTFRLPSNTALIERSAKLSVFAEENSSPEEANLAPLSSRANLNRVKHEPPETDSNPKSTSIIASNPPIENKNERAAKRKEREKKDKESSKKSRSVAEETSGDGEKLPYIHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVSPRIDFDLDSILAAEGASRVDCNFPDMVTEPVWKEVPDNGNRQQYQQQWQLDAFTQPIWGREEENRNFMTPEYSLLSYDSLANSASLQPNHLKMEM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3237 371 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983
Prci1g3237 371 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Prci1g3237 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 279 IPR036638 GO:0046983
Prci1g3237 371 Coils Coil 251 271 - -
Prci1g3237 371 SMART finulus 217 267 IPR011598 GO:0046983
Prci1g3237 371 MobiDBLite consensus disorder prediction 165 201 - -
Prci1g3237 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Prci1g3237 371 MobiDBLite consensus disorder prediction 117 201 - -
Prci1g3237 371 CDD bHLH_AtBPE_like 201 286 - -
Prci1g3237 371 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 122 342 IPR024097 GO:0006355
Prci1g3237 371 Gene3D - 208 280 IPR036638 GO:0046983
Prci1g3237 371 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3237 Prci-Chr1 50061490 50067817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3237 1 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.622 3.77e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g3237 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3237 - - pcin:129286268 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3237 1 50061490 50067817 Prci3g2613 3 38834254 38840378 CCT
Prci1g3237 1 50061490 50067817 Prci1g3237 1 50061490 50067817 ECH