Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3236 ATGGAGCTAACTACAGGAGGTTCCACTGGGTTCAGTCTCACTGGTGAACGCGATCGGGCCGCACTTGAATCCGTTCAATTCAACGAGGAAATCGCGCGAATCATAGCCCCGGCCCCAGAAAATCTTAGCTCGTTCACTGCACTTCTCGAACTCCCCGCAGCGCAGGCCAAGGAGATCCTCCGCTCGCCCAACTCTGACAGAGCCGCCGCGGTGATCCGCGCCTTCGGGGAACCCTTGAGCCATATCAATGATCAGAAACCCCACAGATTTCATTCTTTCAGTGACACCTTTAGACTCCCTTCCAACACTGCTTTGATCGAACGCTCCGCTAAGCTTTCCGTATTTGCTGAAGAAAACTCGTCACCGGAGGAGGCCAACTTGGCTCCACTTAGTTCACGAGCAAATTTAAACAGAGTGAAGCATGAACCCCCGGAAACCGATTCAAATCCGAAGTCCACCTCTATTATCGCCTCTAACCCCCCGATTGAGAACAAGAACGAGAGGGCCGCAAAGAGGAAGGAACGAGAGAAGAAGGTATCTGTAAATGGAATTGTGATCAAGCAAGAGTTAGGGTTTCTGTTTCCGATGATTTGGATGAATTTGGCGCTTGAAACATGGAACAATGACCGAATCTTTAAAATACAGGATAAAGAATCCTCGAAGAAGAGTAGAAGCGTCGCCGAAGAAACATCCGGAGACGGAGAGAAACTTCCATACATTCATGTTCGAGCTCGTCGCGGTCAGGCTACAGACAGCCATAGCTTAGCAGAAAGGGCCAGGAGAGAGAAAATTAACGCCCGTATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCGATAAGATTTCAGGAACAGCGTTAGTTCTGGATGAAATCATCAACCATGTTCAATCTCTTCAACGTCAAGTGGAGTTCTTGTCAATGAAACTAGCAGCAGTTAGCCCAAGAATTGATTTCGACCTTGACAGCATATTGGCCGCCGAAGGTGCATCTCGAGTGGACTGCAACTTCCCCGACATGGTTACAGAGCCAGTGTGGAAGGAAGTTCCAGACAACGGAAATAGACAGCAATATCAACAACAGTGGCAATTGGATGCATTCACCCAACCGATTTGGGGAAGGGAAGAAGAGAACCGGAATTTCATGACCCCAGAATACTCTCTCTTGAGTTATGACTCGTTGGCAAATTCAGCCTCTCTGCAGCCAAATCATTTGAAGATGGAGATGTGA 1227 0.4866 MELTTGGSTGFSLTGERDRAALESVQFNEEIARIIAPAPENLSSFTALLELPAAQAKEILRSPNSDRAAAVIRAFGEPLSHINDQKPHRFHSFSDTFRLPSNTALIERSAKLSVFAEENSSPEEANLAPLSSRANLNRVKHEPPETDSNPKSTSIIASNPPIENKNERAAKRKEREKKVSVNGIVIKQELGFLFPMIWMNLALETWNNDRIFKIQDKESSKKSRSVAEETSGDGEKLPYIHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVSPRIDFDLDSILAAEGASRVDCNFPDMVTEPVWKEVPDNGNRQQYQQQWQLDAFTQPIWGREEENRNFMTPEYSLLSYDSLANSASLQPNHLKMEM 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3236 408 MobiDBLite consensus disorder prediction 137 175 - -
Prci1g3236 408 Pfam Helix-loop-helix DNA-binding domain 252 299 IPR011598 GO:0046983
Prci1g3236 408 Coils Coil 288 308 - -
Prci1g3236 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 126 379 IPR024097 GO:0006355
Prci1g3236 408 CDD bHLH_AtBPE_like 238 323 - -
Prci1g3236 408 Coils Coil 405 408 - -
Prci1g3236 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 298 IPR011598 GO:0046983
Prci1g3236 408 SMART finulus 254 304 IPR011598 GO:0046983
Prci1g3236 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 316 IPR036638 GO:0046983
Prci1g3236 408 FunFam transcription factor bHLH48-like isoform X1 245 317 - -
Prci1g3236 408 Gene3D - 245 317 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3236 Prci-Chr1 50061488 50067817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3236 1 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 44.470 9.82e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g3236 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3236 - - pcin:129286268 773.081