Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3229 ATGGATTCCAATTCCTTTCTCAATTATCAGCACCAACGTCAGCCCAATTCCGGGTTGCTTCGGTTTCGCTCTGCCCCGACTTCGGTTCTTTCAAATTTCACCCAAGCCCTTGGTTCTGATCTCGGCAAGGGCGATAATCCGTGGGAGACTTCCGAATCCGATAAATTAATCTCTAGATTCGTAAATAACAACGAACCGGATTCTCCTGGTTTCCAGGAATTCGAAGCCAAGGCCCCTGAAGCACCGGCCGAGACAGCACTCAACCATATGAACTCTTATAATGGTTTGCCCCCTCACTACCCGAGGCAAAATTCTACGGCGAGTTCCGCCATGGATAGTTCATATGGTCATGGACTGGTGGGTTCATTTGAAATGGATCCTCAAACGCAGCCGAAGGGCTTCACTCCGAATCTTCTCAGGCAAAGTAGCTCCCCTGCCGGGCTTTTCTCCAACACTTCCTTTCCAAACGGGTATTCCAATTCTACCATTAAGGGTGTTGGAAACTATGGTGGGTCGAATGGCAGGAATAGTGAAGGGAGTCCGTCCATGAGCAGATTGAAGAATCAGTTCGGGTTCTTATCAAGAAGTGGTTCTTCCCTGGGAATGTTATCACAAATCTCTGAGATAGAGGGTGAGAACACCGAAGCAACCAACCCTGACAACGGGGGTTTGGGATCTGTCAATGCTTTTGACCCTGGGTTTCCGTACAGTTCCTGGAATGATACGTCCCATCTCTCAGAAAATCTCGGTGGCTTGAAAAGAGAGCCAAGTAACGGTGAAAAATTATTCTCTAATTCTCAGAATGGACCGCTTGGAAATCGGGTTCCTATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAGCAGATATGAGTGCCATGGAGAAGCTTCTTCAATTCCCAGACTCTGTTCCTTGTAAAATAAGAGCAAAGCGAGGCTGTGCTACCCATCCTCGAAGCATTGCAGAAAGGGTTAGAAGAACTCGGATCAGTGAACGGATGAGGAAACTTCAAGAGCTTGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGATCTTCAAAAACAATTCAAGACTCTCAGCGAGACAAGGGCAAACTGCAAATGTATAAGCACGCAGAAGTCAGATACAAATCATGTTGTTTGA 1179 0.4648 MDSNSFLNYQHQRQPNSGLLRFRSAPTSVLSNFTQALGSDLGKGDNPWETSESDKLISRFVNNNEPDSPGFQEFEAKAPEAPAETALNHMNSYNGLPPHYPRQNSTASSAMDSSYGHGLVGSFEMDPQTQPKGFTPNLLRQSSSPAGLFSNTSFPNGYSNSTIKGVGNYGGSNGRNSEGSPSMSRLKNQFGFLSRSGSSLGMLSQISEIEGENTEATNPDNGGLGSVNAFDPGFPYSSWNDTSHLSENLGGLKREPSNGEKLFSNSQNGPLGNRVPMLSHHLSLPKPSADMSAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSETRANCKCISTQKSDTNHVV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3229 392 Gene3D - 315 387 IPR036638 GO:0046983
Prci1g3229 392 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Prci1g3229 392 SMART finulus 320 370 IPR011598 GO:0046983
Prci1g3229 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 378 IPR036638 GO:0046983
Prci1g3229 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 382 - -
Prci1g3229 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 364 IPR011598 GO:0046983
Prci1g3229 392 CDD bHLH_AtbHLH_like 319 372 IPR045239 -
Prci1g3229 392 FunFam Transcription factor bHLH130 family 315 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3229 Prci-Chr1 50020135 50023103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3229 1 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.985 1.98e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g3229 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3229 - - qsa:O6P43_006556 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3229 1 50020135 50023103 Prci1g3229 1 50020135 50023103 ECH