Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3217 ATGGCGTACAGCGCTAACAAGACCAACAACCACACAGGCACTCAGATGGAACCACTCCCACTCCCACCACCTCCACTTCTTCATCGCCATCCTCATCAAATTCAAGACCACCGAATCTCTTTCGGAATCATGCAATCTTCTCCGTCCTCCTCCATCCCCGCCAATTTTCTGAGCAAGGATTCCGGAGCTTACGATTTGGGCGACTTGGATCAAGCCCTCCTCTTGTATCTCGACGGACAAGCTGAACCTTCCTCCATTAATGTTCAAGACCAAAGACAGAACTCGTCATCATCCGGAATGAGGCCTCCGACTCTAAACATTTTCCCGTCTCAGCCTATGCACGTAGACCCGCCTTCGTCAAAGGCTAGCATGGAATTAGTTTCTCCTCAAAGCAGTGGTTCCAAGAGACCATCGGAGCCCTCCATGAAGTTGTCTCACTCGCAAAACGAAGTCGCCGCCGCCCCTAATCAATCATCCAAAGCTGTCAAGCGAGAGAGCACTCGGAAGGGCACGACCTCAAGTTCTGAACAGGAAGGACCTAAAACACCTGATCCTAAGGCACTCAGAAGACTAGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTGCAGCAGCTAGAGTCAAGTAGGATCAGGCTGAATCAGCTGGAACAAGAGTTGCAGCGCGCAAGAGCTCAAGGCATATTCTTTGGAGGCTCGGGTGCACTTTTGGAAGGAGAGCAAGGCCTTCCTGTCGCCATGGGTAGCATTAGCCCAGAAGCTACAATGTTCGACGCGGAATACGGGAGGTGGGTGGAGGAGCACCACAGGCTAGCGTGCGAGCTGAGAGCTGCCGTTCAAGAGCACCTTCCGGAGAACGAGCTGAGGCTATACGTGGGCAATTGCCTGGCACATTATGACCAGGTTATGAACCTCAAGAGCATTGTGGCTAAAACTGATGTCTTCCACCTTGTTTCCGGCATGTGGAAGACTCCTGCCGAGCGTTGCTTCATGTGGGTGGGCGGATTTAGGCCCTCTGAACTCATTAAGATAATTCTGAATCAAATAGAGCCCCTGACGGAGCAACAAATACTGGGGATCTGTGGGTTGCAGCAATCTACGCAGGAGGCGGAAGATGCTCTCTCGCAAGGGCTCGAAGCTCTGAACCAGTCTCTCTCGGAAACCATAACGTCGGACTCCTTGAGCTCTACCCCAAATATGGCCAACTACATGGGACAAATGGCCCTGGCCATAAATAAGCTCTCCACCCTCGAAGGTTTTGTCCGACAGGCGGATAGTCTTCGGCACCAAACGATTCACCGACTGCATCAGATACTAACGACGCGTCAGGCGGCGAGGTGTTTGCTGGCCATGGCGGAGTACTCTTATCGTCTGAGAGCCCTCAGCTCTCTGTGGGTGGCTCGTCCTCGCCAGGAATGA 1437 0.5254 MAYSANKTNNHTGTQMEPLPLPPPPLLHRHPHQIQDHRISFGIMQSSPSSSIPANFLSKDSGAYDLGDLDQALLLYLDGQAEPSSINVQDQRQNSSSSGMRPPTLNIFPSQPMHVDPPSSKASMELVSPQSSGSKRPSEPSMKLSHSQNEVAAAPNQSSKAVKRESTRKGTTSSSEQEGPKTPDPKALRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARAQGIFFGGSGALLEGEQGLPVAMGSISPEATMFDAEYGRWVEEHHRLACELRAAVQEHLPENELRLYVGNCLAHYDQVMNLKSIVAKTDVFHLVSGMWKTPAERCFMWVGGFRPSELIKIILNQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSLSETITSDSLSSTPNMANYMGQMALAINKLSTLEGFVRQADSLRHQTIHRLHQILTTRQAARCLLAMAEYSYRLRALSSLWVARPRQE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3217 478 Coils Coil 205 232 - -
Prci1g3217 478 ProSiteProfiles DOG1 domain profile. 260 474 IPR025422 GO:0006351|GO:0043565
Prci1g3217 478 MobiDBLite consensus disorder prediction 1 24 - -
Prci1g3217 478 Gene3D - 186 234 - -
Prci1g3217 478 MobiDBLite consensus disorder prediction 123 161 - -
Prci1g3217 478 SMART brlzneu 182 245 IPR004827 GO:0003700|GO:0006355
Prci1g3217 478 CDD bZIP_HBP1b-like 186 238 - -
Prci1g3217 478 MobiDBLite consensus disorder prediction 85 105 - -
Prci1g3217 478 FunFam BZIP family transcription factor 185 234 - -
Prci1g3217 478 MobiDBLite consensus disorder prediction 1 16 - -
Prci1g3217 478 PANTHER TRANSCRIPTION FACTOR TGA9 97 477 - -
Prci1g3217 478 MobiDBLite consensus disorder prediction 85 188 - -
Prci1g3217 478 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 228 IPR004827 GO:0003700|GO:0006355
Prci1g3217 478 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700|GO:0006355
Prci1g3217 478 Pfam bZIP transcription factor 186 219 IPR004827 GO:0003700|GO:0006355
Prci1g3217 478 Pfam Seed dormancy control 279 352 IPR025422 GO:0006351|GO:0043565
Prci1g3217 478 SUPERFAMILY Leucine zipper domain 186 228 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3217 Prci-Chr1 49962262 49968605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3217 54 478 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.920 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Prci1g3217 DOG1 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3217 K14431 - gmx:100799713 714.916