Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3208 ATGATCGAGAAAATGGCTTGCGAGTGCCACTATATGCATCTGATTATCATTGTCTTCTCCGCAATGTTGATTTCCCAGGGTCTCGCATCCACTGATCCGGCTGACGTCACAGCTCTCCGGGATCTATACAAGACATTGAACTATCCGCCGGTGTTGGAAAAATGGAATCTTGAAGATCCTTGTGAGGAGTCTTGGACAGGAGTTGCATGTTCAGGATCGTCAGTCGTGCACCTCAAAATTCAAGGATTGAATCTCACAGGACATCTTGGAAGCCAGCTCCATCATCTACATAATTTGAAGATGCTTGATGTCAGCTCCAATAACATAGAAGGGGAAATACCATTCATCTTACCCCCGAATGCCACCCATATAAACATGGCTTGCAACTATTTGGGCCAAAATATTCCTCACTCATTGACTATGCTGAAAAGACTACGACATTTGAATCTAAGCCACAATTTGTTATCTGGACCCATCGGCAATGTTTTTACAGGCCTAGATAATCTCAGAGAGATGGACCTTTCGTATAACAATTTCACAGGAGATCTACCCAGTTCATTTGGTTCCTTGAAAAACCTTACTAGATTGTTCTTGCAAAATAACAACTTCACTGGATCGGTCACATATCTGGCTGACCTTCCTCTTACAGACTTGAACATTCAAGGTAATCTATTCAGCGGCATTATTCCGCAGCACTTTCAGTACATACCAAATTTATGGATCGGAAGTAATAAGTTCCGTGCAGACGCCAATTCTCCTCCCTGGGTTTTTCCTTTGGATAGGGCACCAGTTGAGTACAACATTAGTCGCCCGCCCACGAATCAGGCAAATGCCATCGAGAACTATTCCTCTCGCAAAAGCAAAGTAAGTGGGCACAAGAAGAAATTTATGACTGCTGGAGGAGTAGCTTTAATGGTTGGTGGGGTGGCGCTAATAGCTACAGGTGTAGCGCTGTTCATTGCAATCCGCTTACAGAGGTTCAAAAGCTTAGAAAGCAGCCATAGCTCATTGAAAGCTCATCCAACTATTGCAACCATAGTCTCTCCTACCACGCCAGAAGAAAGCCCACGAATCCCGCCATTTAATTCTGCATCACTTTTGGGTCCAAGGCGATTACCTCCCTTGCCCCATCACAGAACAGATGCCACGTCAAGAAGAAGTTTTTCCAAGAGATGCAGATTCTCCGGAAGGACAAAAGTTTACTCAGTGGGAGAGCTTCAGTTAGCCACAGACAGCTTCAGTGAAGACAACTTTTTGGGAGAGGGATCTTTGGGTCCTGTTTACAGAGCCGTGTTTCCAAATGGCCAAACTTTGGCTTTGAAGAATATCAACATGGCGGGCCTGTCTTTCCACGAAGAGGAAAAGTTTTTGGATGTCGTTTCCACCGCTTCCCGTCTGAGGCACCCCAACATCGTTGCGCTTAATGGTTATTGTATGGAGCACGGGCAGCATCTTCTTGTTTACGATTATGTTAGAAGCTTAACTCTGGACGATGCTCTCCACATGAAGGCCTACAAGCCTTTATCGTGGGCCCTCCGTCTCCGGATTGCCCTTGGTGTTGCCCAGGCTTTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTAGTCCACGGCAACTTGAAGGCTGCCAATATCCTTCTCGACGAGAATCTGGCGCCTTGTGTCTCTGACTGTGGCCTAGCTACTTTGAGACCGCTGACGAACAACAAAGTCAGAGGTTCTGAACTTGCAACTGAGGACGCAGGCTGCATTGCACCAGACCATGGCCAACCAGGAGTTAGCAACACGAAGAGTGATGTCTATGCGTTTGGGGTGTTGCTTCTGGAATTATTAACGGGAAAGAAACCTTACGACGATTCGAGGCCAAGGGAGGGACAATATCTGGGGAAATGGGCATCATCGAGGCTTCATGACAGTGAGAGTTTGGAACAGATGGTGGATCCCGGAATTAAAGGGACTGTTTCAACCAAAGCTCTTTCTCATTATGCCGATATCATCACCCTCTGCATACAGCCCGCGAAGGAATTCCGACCTCTGATGTCCGAGGTGGTTGACTCTCTTATAACCTGTTCGCGAAAGATTAACATGGGCACATCCAAGACTGGTGGTGCAGAAGCTGATATCACTGACTTGGATCCAATTGACAAGTCTTTCCGTTCAACCAATACTCGCTTTCTGGGTTCCCCCGCATATAGCTACGTATCCGCCTGA 2211 0.4677 MIEKMACECHYMHLIIIVFSAMLISQGLASTDPADVTALRDLYKTLNYPPVLEKWNLEDPCEESWTGVACSGSSVVHLKIQGLNLTGHLGSQLHHLHNLKMLDVSSNNIEGEIPFILPPNATHINMACNYLGQNIPHSLTMLKRLRHLNLSHNLLSGPIGNVFTGLDNLREMDLSYNNFTGDLPSSFGSLKNLTRLFLQNNNFTGSVTYLADLPLTDLNIQGNLFSGIIPQHFQYIPNLWIGSNKFRADANSPPWVFPLDRAPVEYNISRPPTNQANAIENYSSRKSKVSGHKKKFMTAGGVALMVGGVALIATGVALFIAIRLQRFKSLESSHSSLKAHPTIATIVSPTTPEESPRIPPFNSASLLGPRRLPPLPHHRTDATSRRSFSKRCRFSGRTKVYSVGELQLATDSFSEDNFLGEGSLGPVYRAVFPNGQTLALKNINMAGLSFHEEEKFLDVVSTASRLRHPNIVALNGYCMEHGQHLLVYDYVRSLTLDDALHMKAYKPLSWALRLRIALGVAQALDYLHSTFSPPVVHGNLKAANILLDENLAPCVSDCGLATLRPLTNNKVRGSELATEDAGCIAPDHGQPGVSNTKSDVYAFGVLLLELLTGKKPYDDSRPREGQYLGKWASSRLHDSESLEQMVDPGIKGTVSTKALSHYADIITLCIQPAKEFRPLMSEVVDSLITCSRKINMGTSKTGGAEADITDLDPIDKSFRSTNTRFLGSPAYSYVSA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3208 736 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 32 257 - -
Prci1g3208 736 SUPERFAMILY L domain-like 31 240 - -
Prci1g3208 736 SMART LRR_typ_2 142 165 IPR003591 -
Prci1g3208 736 SMART LRR_typ_2 166 189 IPR003591 -
Prci1g3208 736 SMART LRR_typ_2 96 123 IPR003591 -
Prci1g3208 736 SMART LRR_typ_2 190 213 IPR003591 -
Prci1g3208 736 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3208 736 Pfam Leucine rich repeat 162 203 IPR001611 GO:0005515
Prci1g3208 736 SUPERFAMILY Protein kinase-like (PK-like) 387 687 IPR011009 -
Prci1g3208 736 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 490 - -
Prci1g3208 736 FunFam Leucine-rich repeat receptor-like protein kinase 491 698 - -
Prci1g3208 736 Gene3D Ribonuclease Inhibitor 32 260 IPR032675 -
Prci1g3208 736 MobiDBLite consensus disorder prediction 374 388 - -
Prci1g3208 736 Pfam Protein tyrosine and serine/threonine kinase 417 687 IPR001245 GO:0004672|GO:0006468
Prci1g3208 736 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 689 IPR046959 -
Prci1g3208 736 Gene3D Transferase(Phosphotransferase) domain 1 493 707 - -
Prci1g3208 736 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Prci1g3208 736 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Prci1g3208 736 MobiDBLite consensus disorder prediction 348 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3208 Prci-Chr1 49900743 49906010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3208 5 736 Strubbelig Receptor Gene Family AT5G06820 54.852 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Prci1g3208 PK_Tyr_Ser-Thr 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3208 - - tpra:123896060 966.837