Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3203 ATGCCAAGCCTTACTATTCCAGGCATAAAGTCTGTATTTTTCACTCTAAATCCCCTAAAGTCATTGTCGCTGGTCTGGAACAGAGGTTTTGCCAGCAGTGCAGCAGCCTTGTCCAGATTTCATCAGCTTACTGAATTTGATCAAGAAAAACGAAGTTGCCGCAGGCGACTTGCAGGCCATAATGAACGTCGGCGAAAGCCCCAACCCAGCTCCTTGTTGATCTCTCCCTATGCCAGATTTTCTTCAGCTGTATTTGAGAGCAAATCTAGATATTTGGCACTTGCTTTGACAGAGAACCGGGGCAGAGTTGGTGGCTTTCTGATGGAATTTGCTGCATACCGTAAGCCAACTCTGGCATCAACATCAACAGAGCAAGTTTCAGGGAATCAAAGCTCAACAACTCCATGGCAAGGCAACTTGCAGCTTCCTGAACTCTTCTTGCGAGGTTCGATGGGCAGCATAAACAGCTTTGGTCCCAGCCATCTAGGGGAATGCTTTGCTGGGATTGCAGACACTAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGCTTCAGAAACACACTACCAGCTCTTGGGGTGAACAACTTATGTTTCGAAGGGACATCCATCACACAACTTGCTGCATCTTCTCATGGCGCTCCCATGCATCACCTTTCAAATGCCTCGGGGTCTTTCAATGGCATTGAACCTGACACTTGTTTGCATGATGATGTAGTTGTCCCTGATCTTGGTGCGGCTCCGATTTCACTGTCTAACAATAGTGAACTTCCTGGTGGGCTTGTGATGCCACAACCTGACAGGCAATATGTTGATCGACAATCCGAGGCCTACGAGTCTTCTCAGCTGATGCACTGGTCCCTTTGA 870 0.4782 MPSLTIPGIKSVFFTLNPLKSLSLVWNRGFASSAAALSRFHQLTEFDQEKRSCRRRLAGHNERRRKPQPSSLLISPYARFSSAVFESKSRYLALALTENRGRVGGFLMEFAAYRKPTLASTSTEQVSGNQSSTTPWQGNLQLPELFLRGSMGSINSFGPSHLGECFAGIADTSCALSLLSNQTWGFRNTLPALGVNNLCFEGTSITQLAASSHGAPMHHLSNASGSFNGIEPDTCLHDDVVVPDLGAAPISLSNNSELPGGLVMPQPDRQYVDRQSEAYESSQLMHWSL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3203 289 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 243 IPR044817 GO:0003677
Prci1g3203 289 ProSiteProfiles Zinc finger SBP-type profile. 1 67 IPR004333 GO:0003677
Prci1g3203 289 SUPERFAMILY SBT domain 38 72 IPR036893 GO:0003677|GO:0005634
Prci1g3203 289 Pfam SBP domain 37 66 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3203 Prci-Chr1 49892994 49895170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3203 38 181 SBP-box Gene Family AT2G42200 41.176 1.02e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci1g3203 SBP 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3203 - - gmx:100807165 232.646