Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3202 ATGCTCAACCTCTCTCCCCCCCTTTCCGACCCTCAAATGTGTTCATCCTCCGCCGACTGCCTTCACGGCTTGAAATCTGGCCACAAAATCTACTTTGAGGATGTGACGATGGGAGCTCCGCCCAAATCCACTGCTGGCGGGGCCTCCTCTTCCTCTGGGACGGGCACGAAGAAGGGGAGGAGCGGTACTCTTCAAGGAGCTCGGCCTCCAAGGTGTCAGGTCGAGTGCTGTAGCGTAGATCTGAGTGATGCCAAGCCTTACTATTCCAGGCATAAAGTCTGTATTTTTCACTCTAAATCCCCTAAAGTCATTGTCGCTGGTCTGGAACAGAGGTTTTGCCAGCAGTGCAGCAGATTTCATCAGCTTACTGAATTTGATCAAGAAAAACGAAGTTGCCGCAGGCGACTTGCAGGCCATAATGAACGTCGGCGAAAGCCCCAACCCAGCTCCTTGTTGATCTCTCCCTATGCCAGATTTTCTTCAGCTGTATTTGAGAACCGGGGCAGAGTTGGTGGCTTTCTGATGGAATTTGCTGCATACCGTAAGCCAACTCTGGCATCAACATCAACAGAGCAAGTTTCAGGGAATCAAAGCTCAACAACTCCATGGCAAGGCAACTTGCAGCTTCCTGAACTCTTCTTGCGAGGTTCGATGGGCAGCATAAACAGCTTTGGTCCCAGCCATCTAGGGGAATGCTTTGCTGGGATTGCAGACACTAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGCTTCAGAAACACACTACCAGCTCTTGGGGTGAACAACTTATGTTTCGAAGGGACATCCATCACACAACTTGCTGCATCTTCTCATGGCGCTCCCATGCATCACCTTTCAAATGCCTCGGGGTCTTTCAATGGCATTGAACCTGACACTTGTTTGCATGATGATGTAGTTGTCCCTGATCTTGGTGCGGCTCCGATTTCACTGTCTAACAATAGTGAACTTCCTGGTGGGCTTGTGATGCCACAACCTGACAGGCAATATGTTGATCGACAATCCGAGGCCTACGAGTCTTCTCAGCTGATGCACTGGTCCCTTTGA 1071 0.5033 MLNLSPPLSDPQMCSSSADCLHGLKSGHKIYFEDVTMGAPPKSTAGGASSSSGTGTKKGRSGTLQGARPPRCQVECCSVDLSDAKPYYSRHKVCIFHSKSPKVIVAGLEQRFCQQCSRFHQLTEFDQEKRSCRRRLAGHNERRRKPQPSSLLISPYARFSSAVFENRGRVGGFLMEFAAYRKPTLASTSTEQVSGNQSSTTPWQGNLQLPELFLRGSMGSINSFGPSHLGECFAGIADTSCALSLLSNQTWGFRNTLPALGVNNLCFEGTSITQLAASSHGAPMHHLSNASGSFNGIEPDTCLHDDVVVPDLGAAPISLSNNSELPGGLVMPQPDRQYVDRQSEAYESSQLMHWSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3202 356 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Prci1g3202 356 MobiDBLite consensus disorder prediction 43 61 - -
Prci1g3202 356 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 310 IPR044817 GO:0003677
Prci1g3202 356 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Prci1g3202 356 Pfam SBP domain 72 145 IPR004333 GO:0003677
Prci1g3202 356 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Prci1g3202 356 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Prci1g3202 356 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3202 Prci-Chr1 49892511 49895170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3202 24 248 SBP-box Gene Family AT2G42200 49.153 1.28e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci1g3202 SBP 3.3e-30 No_clan