Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3201 ATGCTCAACCTCTCTCCCCCCCTTTCCGACCCTCAAATGTGTTCATCCTCCGCCGACTGCCTTCACGGCTTGAAATCTGGCCACAAAATCTACTTTGAGGATGTGACGATGGGAGCTCCGCCCAAATCCACTGCTGGCGGGGCCTCCTCTTCCTCTGGGACGGGCACGAAGAAGGGGAGGAGCGGTACTCTTCAAGGAGCTCGGCCTCCAAGGTGTCAGGTCGAGTGCTGTAGCGTAGATCTGAGTGATGCCAAGCCTTACTATTCCAGGCATAAAGTCTGTATTTTTCACTCTAAATCCCCTAAAGTCATTGTCGCTGGTCTGGAACAGAGGTTTTGCCAGCAGTGCAGCAGATTTCATCAGCTTACTGAATTTGATCAAGAAAAACGAAGTTGCCGCAGGCGACTTGCAGGCCATAATGAACGTCGGCGAAAGCCCCAACCCAGCTCCTTGTTGATCTCTCCCTATGCCAGATTTTCTTCAGCTGTATTTGAGAGCAAATCTAGATATTTGGCACTTGCTTTGACAGAGAACCGGGGCAGAGTTGGTGGCTTTCTGATGGAATTTGCTGCATACCGTAAGCCAACTCTGGCATCAACATCAACAGAGCAAGTTTCAGGGAATCAAAGCTCAACAACTCCATGGCAAGGCAACTTGCAGCTTCCTGAACTCTTCTTGCGAGGTTCGATGGGCAGCATAAACAGCTTTGGTCCCAGCCATCTAGGGGAATGCTTTGCTGGGATTGCAGACACTAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGCTTCAGAAACACACTACCAGCTCTTGGGGTGAACAACTTATGTTTCGAAGGGACATCCATCACACAACTTGCTGCATCTTCTCATGGCGCTCCCATGCATCACCTTTCAAATGCCTCGGGGTCTTTCAATGGCATTGAACCTGACACTTGTTTGCATGATGATGTAGTTGTCCCTGATCTTGGTGCGGCTCCGATTTCACTGTCTAACAATAGTGAACTTCCTGGTGGGCTTGTGATGCCACAACCTGACAGGCAATATGTTGATCGACAATCCGAGGCCTACGAGTCTTCTCAGCTGATGCACTGGTCCCTTTGA 1107 0.4995 MLNLSPPLSDPQMCSSSADCLHGLKSGHKIYFEDVTMGAPPKSTAGGASSSSGTGTKKGRSGTLQGARPPRCQVECCSVDLSDAKPYYSRHKVCIFHSKSPKVIVAGLEQRFCQQCSRFHQLTEFDQEKRSCRRRLAGHNERRRKPQPSSLLISPYARFSSAVFESKSRYLALALTENRGRVGGFLMEFAAYRKPTLASTSTEQVSGNQSSTTPWQGNLQLPELFLRGSMGSINSFGPSHLGECFAGIADTSCALSLLSNQTWGFRNTLPALGVNNLCFEGTSITQLAASSHGAPMHHLSNASGSFNGIEPDTCLHDDVVVPDLGAAPISLSNNSELPGGLVMPQPDRQYVDRQSEAYESSQLMHWSL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3201 368 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Prci1g3201 368 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 322 IPR044817 GO:0003677
Prci1g3201 368 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Prci1g3201 368 Pfam SBP domain 72 145 IPR004333 GO:0003677
Prci1g3201 368 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Prci1g3201 368 MobiDBLite consensus disorder prediction 43 61 - -
Prci1g3201 368 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Prci1g3201 368 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3201 Prci-Chr1 49892509 49895170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3201 24 260 SBP-box Gene Family AT2G42200 45.122 1.11e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci1g3201 SBP 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3201 - - qsa:O6P43_006579 357.451