Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3199 ATGGATGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGTAACGGCGATGCTTCTTCAAAGGAAGAGCTCCGCTTTCTCCTTGATCCTCTGGCCAAACCCCAGCTCGTTGATCTTCTTGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGAATACCACTTCAGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAAGGGGCTGTTATCTATGATAAAGCAACAGGAAAATCACGTGGTTATGGTTTCATCACTTACAAACATATGGAATCAACTCATCATGCATTAGGAGCACCAAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAAGCGGGGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTATATTGGGAGCTTATCACCAGAAGTCAGTAGTGAAACGTTGCTCAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTTACATACAAGACTGCAGAAGCTGCAAAGAGGGCCATTGATGATCCAGTAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCGGATTCCCACAAGGGTAAAACAGGTCAGCAGTCCTTGGTTCCAATGACAGCCTTGCCTATGGCTCCTGGTTATGTGCAGATGCAGCATGTCAAAACACATATTAGCAGTCCTCAAGTTGGCTACAATTACCCGCAGACCGTAGCATCATACACGGCACCTTATCCAAGCCCCCCCACCGCACCTGCTCCTTATCCTGCACAAGGGCAAGTTTCTTATCCTCCTGTTTCTGGGAAGTCAACCCCGCCTGTGGGAATGAACAACTACCCATATTACTATCCTAAGCAATAA 978 0.4499 MDDFKKRKLEEAGNGDASSKEELRFLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHHALGAPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVSSETLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKRAIDDPVKTLGGRNIIVKYADSHKGKTGQQSLVPMTALPMAPGYVQMQHVKTHISSPQVGYNYPQTVASYTAPYPSPPTAPAPYPAQGQVSYPPVSGKSTPPVGMNNYPYYYPKQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3199 325 Gene3D - 55 142 IPR012677 -
Prci1g3199 325 FunFam UBP1-associated protein 2C-like 60 141 - -
Prci1g3199 325 SUPERFAMILY RNA-binding domain, RBD 149 237 IPR035979 GO:0003676
Prci1g3199 325 Gene3D - 144 247 IPR012677 -
Prci1g3199 325 MobiDBLite consensus disorder prediction 285 318 - -
Prci1g3199 325 CDD RRM2_NsCP33_like 156 230 - -
Prci1g3199 325 SUPERFAMILY RNA-binding domain, RBD 63 141 IPR035979 GO:0003676
Prci1g3199 325 SMART rrm1_1 156 228 IPR000504 GO:0003723
Prci1g3199 325 SMART rrm1_1 65 137 IPR000504 GO:0003723
Prci1g3199 325 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 55 132 - -
Prci1g3199 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Prci1g3199 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Prci1g3199 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Prci1g3199 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3199 Prci-Chr1 49880483 49884277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3199 151 240 C2H2 Transcription Factor Family AT2G19380 34.444 7.73e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3199 K12741 - gmx:100776344 496.893