Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3198 ATGAACAAGAACAAGGTTGATTTCCCGGGGCGAGTTCAAGTTCAGCAGAGCCACGGACTAAACGGGGATTCTAATCCCGAGTTTGGTAATAGTTATTGTCAATTCATGGATATCAGTCAGGCCTGGAATATAGGAAGTTGCAGCCAAACACTTGCCGTCGCGGGAGAAGGAGCCCAACAACCACCGAACCAAGGCCCTGCAGAATCCTCCTCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTTTACGCCGCAGAACGATGCATGGGGTTTCAGCAATATGATTCCCAACTTGCAATGGTGAAACCTCCATTGAGTAGTAATCAATACTGCAGATCGCCTGAAAAATCCAGTAAAATTTCCTATGGGAATTTGACTCCCACCAAGTTTCTTCCTATTCAACAACACAGCTTGTTTGTTAACGACGCTGCCTCAGTTAAGAGGAACTCACCTTATAAGGGAAATCAGGATCATACGGTTGGTCTTGGCTTATATAATTTACGTGTTGATCAGATGAGTTTATCATCTCAGCAAGAGAAGCTGTCTCCATCACTCACATCAGAAGGGAGTGTGTCAGCTGTTTCTGGGAACCAGGGATCTAATGGGACAGTAGTCTCAAGCAAAACACGTATAAGATGGAATCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAGGCGACCCCAAAAGCCATATTAAAGCTGATGGACTCCGATGGATTGACCATCTTCCATGTGAAGAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGACCCAGCTCAAGGAAAGTCTGATAACGGACCCAATGTAGAAGATGTGCATCATCTTGACACCAAAACTGGGTTACAGTTAAGAGAGGCGCTTCAGCTGCAGTTAGATGTTCAGAGGCGTCTTCATGAGCAGTTAGAGATTCAGAGAAAATTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAACAGCAAATAACAAGTGATAGCCTCTTGAATACTCAGAATATGAGTAGCACAGCCAATGATAATACCGATACATCAAATAATCATAAAGATGTTGAATTATCAACTTCTGAAGGGTCTGGGAATTCTTTCTTCCCTTCCAAGATAAGTTAG 1161 0.435 MNKNKVDFPGRVQVQQSHGLNGDSNPEFGNSYCQFMDISQAWNIGSCSQTLAVAGEGAQQPPNQGPAESSSTIMSRFESPASAFYAAERCMGFQQYDSQLAMVKPPLSSNQYCRSPEKSSKISYGNLTPTKFLPIQQHSLFVNDAASVKRNSPYKGNQDHTVGLGLYNLRVDQMSLSSQQEKLSPSLTSEGSVSAVSGNQGSNGTVVSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRIAKYMPDPAQGKSDNGPNVEDVHHLDTKTGLQLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQITSDSLLNTQNMSSTANDNTDTSNNHKDVELSTSEGSGNSFFPSKIS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3198 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 191 369 IPR044848 GO:0003700
Prci1g3198 386 MobiDBLite consensus disorder prediction 9 23 - -
Prci1g3198 386 MobiDBLite consensus disorder prediction 349 386 - -
Prci1g3198 386 Gene3D - 209 268 - -
Prci1g3198 386 MobiDBLite consensus disorder prediction 178 209 - -
Prci1g3198 386 Pfam MYB-CC type transfactor, LHEQLE motif 295 339 IPR025756 -
Prci1g3198 386 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Prci1g3198 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Prci1g3198 386 Coils Coil 297 317 - -
Prci1g3198 386 MobiDBLite consensus disorder prediction 1 23 - -
Prci1g3198 386 SUPERFAMILY Homeodomain-like 208 264 IPR009057 -
Prci1g3198 386 FunFam Myb family transcription factor 209 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3198 Prci-Chr1 49874773 49877623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3198 207 339 G2-like Transcription Factor Family AT3G04450 56.934 2.39e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g3198 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3198 - - gmx:102668541 433.721