Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3197 ATGAACAAGAACAAGGTTGATTTCCCGGGGCGAGTTCAAGTTCAGCAGAGCCACGGACTAAACGGGGATTCTAATCCCGAGTTTGGTAATAGTTATTGTCAATTCATGGATATCAGTCAGGCCTGGAATATAGGAAGTTGCAGCCAAACACTTGCCGTCGCGGGAGAAGGAGCCCAACAACCACCGAACCAAGGCCCTGCAGAATCCTCCTCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTTTACGCCGCAGAACGATGCATGGGGTTTCAGCAATATGATTCCCAACTTGGTAATCCCTCTTTGACCTCTCAGTTTTCCAAGCTTAACGACTTGGATTTCCCTCTTTATCAGTCTGACCCCAGCTTCGAATTGTCCAATACCTTGCAAGCAATGGTGAAACCTCCATTGAGTAGTAATCAATACTGCAGATCGCCTGAAAAATCCAGTAAAATTTCCTATGGGAATTTGACTCCCACCAAGTTTCTTCCTATTCAACAACACAGCTTGTTTGTTAACGACGCTGCCTCAGTTAAGAGGAACTCACCTTATAAGGGAAATCAGGATCATACGGTTGGTCTTGGCTTATATAATTTACGTGTTGATCAGATGAGTTTATCATCTCAGCAAGAGAAGCTGTCTCCATCACTCACATCAGAAGGGAGTGTGTCAGCTGTTTCTGGGAACCAGGGATCTAATGGGACAGTAGTCTCAAGCAAAACACGTATAAGATGGAATCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAGGCGACCCCAAAAGCCATATTAAAGCTGATGGACTCCGATGGATTGACCATCTTCCATGTGAAGAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGACCCAGCTCAAGGAAAGTCTGATAACGGACCCAATGTAGAAGATGTGCATCATCTTGACACCAAAACTGGGTTACAGTTAAGAGAGGCGCTTCAGCTGCAGTTAGATGTTCAGAGGCGTCTTCATGAGCAGTTAGAGATTCAGAGAAAATTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAACAGCAAATAACAAGTGATAGCCTCTTGAATACTCAGAATATGAGTAGCACAGCCAATGATAATACCGATACATCAAATAATCATAAAGATGTTGAATTATCAACTTCTGAAGGGTCTGGGAATTCTTTCTTCCCTTCCAAGATAAGTTAG 1260 0.4357 MNKNKVDFPGRVQVQQSHGLNGDSNPEFGNSYCQFMDISQAWNIGSCSQTLAVAGEGAQQPPNQGPAESSSTIMSRFESPASAFYAAERCMGFQQYDSQLGNPSLTSQFSKLNDLDFPLYQSDPSFELSNTLQAMVKPPLSSNQYCRSPEKSSKISYGNLTPTKFLPIQQHSLFVNDAASVKRNSPYKGNQDHTVGLGLYNLRVDQMSLSSQQEKLSPSLTSEGSVSAVSGNQGSNGTVVSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRIAKYMPDPAQGKSDNGPNVEDVHHLDTKTGLQLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQITSDSLLNTQNMSSTANDNTDTSNNHKDVELSTSEGSGNSFFPSKIS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3197 419 MobiDBLite consensus disorder prediction 9 23 - -
Prci1g3197 419 Pfam Myb-like DNA-binding domain 247 296 IPR001005 -
Prci1g3197 419 Coils Coil 330 350 - -
Prci1g3197 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 225 402 IPR044848 GO:0003700
Prci1g3197 419 MobiDBLite consensus disorder prediction 211 242 - -
Prci1g3197 419 Gene3D - 242 301 - -
Prci1g3197 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 243 298 IPR006447 GO:0003677
Prci1g3197 419 MobiDBLite consensus disorder prediction 1 23 - -
Prci1g3197 419 FunFam Myb family transcription factor 242 300 - -
Prci1g3197 419 Pfam MYB-CC type transfactor, LHEQLE motif 328 372 IPR025756 -
Prci1g3197 419 SUPERFAMILY Homeodomain-like 241 297 IPR009057 -
Prci1g3197 419 MobiDBLite consensus disorder prediction 382 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3197 Prci-Chr1 49874601 49877623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3197 240 372 G2-like Transcription Factor Family AT3G04450 56.934 4.45e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g3197 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3197 - - ccaj:109797364 489.574