LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g3170	ATGCTTGATCATCATCATCAGCAGCAGCATTTTAGACTTGGCCTCCGATCTCTGATAGTTTCCCCCTCAGACGTTGCCATTCAATTTGTCTGGCTACTCACAGCAGGCTTAGAGCTCACTCCGTGTGTATTGCTATCGCAAATCCTTCAAAGCGCATATGTTATCGACCGTTTAATGATCAGTAGAATGCAATTTTGTTGGATGGTTAAGCCTCAACTTTTAGCAGTCATCTTCATCTGTATTCTCGGCCATACCAGGGTTGACTGCTTTTCTTTCAATTTCCCCACCTTTGACGAACAAGAAGATCAAAATCGATTAATACTGAGTAAATTTTCCCGTATATTCCGTGAGGCCATCCAAGTGACGCCTGATGCTTATGGTGAAGACTTGAGGAACAGGTCCGGAAGGGCCTTCTACAACAAGGCATATAGATTATGGAGCAAGAAGAACGAAAAAACTGCATCATTTAATACCACCTTCGTCCTCAATATCAGCCCCGACACTCCTTCAAACCCAGGTGCAGGCGAAGGTTTGGCCTTCGTGCTAGCCGCTGACAACAGTCTCCCGCCCAACAGCCATGGAAGATGGCTTGGCATCGTGAATTCTTCCACAAACGGCACTTCTGCTGCTGCCATATTGGCCGTGGAGTTTGATACCAGACAAAACTCACCCGAAGATGGCCCAACCGGACATGTTGGCGTGAACGTGAACAGTGTTTACTCCATCAAGCAGTCTCCGTTACTTCCCTTGGGGATCAATATTTCATCCGGCATCAATGTGACGGTGAGAGTTCAGTACGCTAACGATGTGATTTCTGTTTTTGGTTACATGATGAATGGAACCAAAGCACAAGACATGAACCTCTTGCTTCAATCTCCACCTCTCAATCTCACCTCATATCTCCCACAGAAGGTATTTCTGGGGTTCTCTGCATCCACCAGTAATTTCAATGAGTTGAACTGCATCAGAGCCTGGGAGTTCAACGGTGAAGATATCGGGGACCGAAATCAAAAGCTACTGTGGGTTTGGATCACAGTTCCAACGGTGGTGGCTATCGCAGGTGTGGTGGGATTTTTCTTGATTTGGAGGTGGAAACGAAGCAGGGAGATAGCAGAGGATGCATACCCGGGGATAGAAGACCAGATTCAGTGTTCCTCAATGGCTCCAAAGAAGTTCCGGCTGAGGGAGATCAAGAAGGCAACGAGCAATTTCAATTACCAGAACAAGCTCGGGGAAGGTGGTTTCGGAAAAGTGTACAAGGGAATCCTGGGAAGTAAGGAGATAGCTGTGAAGAGAGTGTCCAAGGATTCACGTCAAGGGAAGCAAGAATTCGTAGCAGAAGTCACGACAATAGGTAGCCTCCACCATAAGAATCTGGTTAAGCTGATAGGGTGGTGCTACGAGAGAAAAGAACTCCTCCTCGTCTACGAGTTCATGCCCAACGGAAGCCTAGACAAGTACCTATTTGGGAGTTCCGAGGGATCATCAGGTCAAAACCTTCGCTGGGAAACCAGATACAGTGTGATATACGGGGTGGCTGAAGCGCTTGACTATCTTCACAACGGATGCGAGAAGAAGGTGATTCACAGGGACATCAAGGCAAGCAACATTATGCTGGACTCAGAGTTCAACGCGAGGCTAGGAGACTTTGGACTGGCCCGAACCATCCAGGAAAGGAACGAGACTCACCACTCCACGAAAGAGATAGCTGGAACACCAGGTTACATGGCCCCAGAGACATTTCTGACAGGGAGGGCAACAGTGGAAACAGACGTGTACGCTTTTGGGGTTCTGATAATGGAAGTGGTGTGTGGGATGAGGCCAGGGAACGCGTGTGCCCAGAACGACTACAAGAATAGCATAGTGTACTGGGTGTGGGAGATGTACGGAAAGGGAAGAACATTGGATGGAATGGATAAGAGAATGAAGAAGGAGACAGAGGAGGACGAAGAACAACCGGAGAGAGTGATAGTGCTGGGGCTGGCTTGTTGCCATCCGAATCCGCACGAAAGGCCATCCATGAAGACGGTACTGCAGGTTCTCACAGGCGAGGTGGCTCCACCGGCGGTCCCTAGAGAACGGCCGGCTTTTGTGTGGCCGGCCGCTCCCCCTTCCTTCAATGTCAATGACAACTCCATTAATTCTGCAGCCCAGCTCACTCCTCCCTTCACTCAGCTCACCGGCAGATGA	2190	0.4904	MLDHHHQQQHFRLGLRSLIVSPSDVAIQFVWLLTAGLELTPCVLLSQILQSAYVIDRLMISRMQFCWMVKPQLLAVIFICILGHTRVDCFSFNFPTFDEQEDQNRLILSKFSRIFREAIQVTPDAYGEDLRNRSGRAFYNKAYRLWSKKNEKTASFNTTFVLNISPDTPSNPGAGEGLAFVLAADNSLPPNSHGRWLGIVNSSTNGTSAAAILAVEFDTRQNSPEDGPTGHVGVNVNSVYSIKQSPLLPLGINISSGINVTVRVQYANDVISVFGYMMNGTKAQDMNLLLQSPPLNLTSYLPQKVFLGFSASTSNFNELNCIRAWEFNGEDIGDRNQKLLWVWITVPTVVAIAGVVGFFLIWRWKRSREIAEDAYPGIEDQIQCSSMAPKKFRLREIKKATSNFNYQNKLGEGGFGKVYKGILGSKEIAVKRVSKDSRQGKQEFVAEVTTIGSLHHKNLVKLIGWCYERKELLLVYEFMPNGSLDKYLFGSSEGSSGQNLRWETRYSVIYGVAEALDYLHNGCEKKVIHRDIKASNIMLDSEFNARLGDFGLARTIQERNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLIMEVVCGMRPGNACAQNDYKNSIVYWVWEMYGKGRTLDGMDKRMKKETEEDEEQPERVIVLGLACCHPNPHERPSMKTVLQVLTGEVAPPAVPRERPAFVWPAAPPSFNVNDNSINSAAQLTPPFTQLTGR	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g3170	729	PANTHER	-	123	688	-	-
	Prci1g3170	729	Pfam	Protein kinase domain	405	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g3170	729	FunFam	probable L-type lectin-domain containing receptor kinase S.5	479	687	-	-
	Prci1g3170	729	Pfam	Legume lectin domain	91	333	IPR001220	GO:0030246
	Prci1g3170	729	ProSiteProfiles	Protein kinase domain profile.	404	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g3170	729	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
	Prci1g3170	729	SUPERFAMILY	Protein kinase-like (PK-like)	386	681	IPR011009	-
	Prci1g3170	729	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	89	336	-	-
	Prci1g3170	729	Gene3D	Transferase(Phosphotransferase) domain 1	479	686	-	-
	Prci1g3170	729	ProSitePatterns	Legume lectins beta-chain signature.	213	219	IPR019825	-
	Prci1g3170	729	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	389	478	-	-
	Prci1g3170	729	Gene3D	Phosphorylase Kinase; domain 1	389	478	-	-
	Prci1g3170	729	CDD	STKc_IRAK	410	683	-	-
	Prci1g3170	729	SUPERFAMILY	Concanavalin A-like lectins/glucanases	88	329	IPR013320	-
	Prci1g3170	729	Gene3D	-	87	339	-	-
	Prci1g3170	729	SMART	serkin_6	404	681	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g3170	729	CDD	lectin_legume_LecRK_Arcelin_ConA	90	328	IPR001220	GO:0030246
	Prci1g3170	729	ProSitePatterns	Protein kinases ATP-binding region signature.	410	431	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g3170	Prci-Chr1	49703678	49706258	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g3170	134	697	Receptor kinase-like Gene Family	AT5G55830	37.789	1.26e-123	382

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Prci1g3170		Pkinase	7.9e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g3170	-		-	pcin:129307821	1457.97