Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3167 ATGGGGGAAGAGACATCGGATGTGATGAACCTTGATCTGAATCTGGGTCCTGATCCAGAGCCAGCATCTGGCTCCATAACCAATCAATCCGTGAGCTTAGAGGATTGGATTGAAGAGCCTCTTCACAGGGTTAGCGACGCGGTTAGGCATAGGACTCGACAGAGGTGGAGATGGCGGCATCTTCACATTAACCCTCCCGAACCCCATCGTGGCTTTCTTATTTCACCTGAGGCACACCGGGAATACTTATTTCACCTGAAGCCCAAAATCTCAATGGAATTGAATCATTTGTTGGTCAACCCTGGTAATGGCAGTGCGTTACAGGCTGGGGAAGGTAGCGTGGCAGCTGAAGAAAGAACAGAGCTGGCAACAAAAGCTTGTGAAACAAACAATGGTGCTACGGAGGATGAAGCATCAGACAAGAAGGATGATGTTGAGAAAGGTAGTAGCAATGACGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGCCATTTGTTTTGCTGGCCATGCCTCTATCGGTGGCTACATGACCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACGCCAATATATGGTCGTGGAAACAATGTCCGTGAACCTGAAGAAGATCCTTCTCTTAAGGTCCCTCTTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGTAATGCATTTGCATTGCCAGTTGAAGAGATGATTCGGCGTCTTGGAAGTCGAATTGATCCCTCTCGAGATGTAGGCCAGCCACATGAGCCTGACATTGCCCGAGAAGCAGCTGACAGAACCACAGCCTTGTTAAATAGATTTTTGACCTCTCGGGCATTAAGGAGAGAGCATATTCATGGGGCAACCGCAGATGATGTAGCGGACTTAACACAAAACAACACTGGCGGCCCTGAGGTGGGGGATAACCGCAGGGTTCAATCCCTTTTGCTTCGAAGACAATCAAATAGAACAACACTTTCTTCTCTTTCATCAGCTCTGAGTTCTGCTGAGAGATTTTTTGACGCATACATCCGTGGCCATCCCATAGGTAGAAACCAAGAGCAGCCTCCACCAGTCGATGACAGAGATTCCTTTTCAAGTGTTGCTGCTGTTATAAACTCGGAGAGTCAAGTAGACACTGCTGTAGAAATTGATTCCATGGTTTCCTTATCGACATCCTCTTCCAGGAGGAGAAATGATGCATCTCGAGTTTCTGATGTGGATAGTGGAGATTCTCGAGCTCCCAGGCGAAGACGTTTGAACTGA 1323 0.4709 MGEETSDVMNLDLNLGPDPEPASGSITNQSVSLEDWIEEPLHRVSDAVRHRTRQRWRWRHLHINPPEPHRGFLISPEAHREYLFHLKPKISMELNHLLVNPGNGSALQAGEGSVAAEERTELATKACETNNGATEDEASDKKDDVEKGSSNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHDHSDAKECPVCKGEVTFKNVTPIYGRGNNVREPEEDPSLKVPLRPHARRVESLRQTIHRNAFALPVEEMIRRLGSRIDPSRDVGQPHEPDIAREAADRTTALLNRFLTSRALRREHIHGATADDVADLTQNNTGGPEVGDNRRVQSLLLRRQSNRTTLSSLSSALSSAERFFDAYIRGHPIGRNQEQPPPVDDRDSFSSVAAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3167 440 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Prci1g3167 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 243 IPR013083 -
Prci1g3167 440 SMART ring_2 158 198 IPR001841 -
Prci1g3167 440 MobiDBLite consensus disorder prediction 1 27 - -
Prci1g3167 440 SUPERFAMILY RING/U-box 154 211 - -
Prci1g3167 440 Pfam Zinc finger, C3HC4 type (RING finger) 158 198 - -
Prci1g3167 440 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Prci1g3167 440 MobiDBLite consensus disorder prediction 407 440 - -
Prci1g3167 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 127 314 IPR045103 GO:0005783|GO:0006511|GO:0061630
Prci1g3167 440 MobiDBLite consensus disorder prediction 418 440 - -
Prci1g3167 440 MobiDBLite consensus disorder prediction 134 149 - -
Prci1g3167 440 CDD RING-HC_AtRMA-like 156 199 - -
Prci1g3167 440 MobiDBLite consensus disorder prediction 126 149 - -
Prci1g3167 440 FunFam Zinc finger family protein 139 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3167 Prci-Chr1 49660960 49663189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3167 1 431 C3H Transcription Factor Family AT3G58030 53.863 4.86e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3167 K10666 - gmx:100811099 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3167 1 49660960 49663189 Prci1g3167 1 49660960 49663189 ECH