Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3166 ATGGAGTTGGCTTTGAGCTTGGGAGACGCGCCGAAGCCCTTCTCTTTTCTTGACAAGGTCACCGACAAGCACGGCCAAGAACCTGGCTTTTGCATACCCCTCGTCGCTGGTTTCGCGGCCAAAAGATGGAATCACAGAGACAGCGATGAGGACAGTAGGAGTTCATCAGGTCCGCCAGTTCAGCTCGATCTTCTTTCCTTGACCCCGCTTCCTCCTCCACCTTCACGCCTTTCAATTCCTTGGCTCTCCCGTCCGTTAGGCGGTGAAGAGATTTCATTGGATAGAGCGGTAGCTTCGAGGGGTTTGGATGTGAACAGTGCGCCGTCGGACGTAGATGAAGCCGACGACGCTGCCGCACTCTCATCCCCGAACAGTGGGATCTCATCATTTCACATGGATTTCCGTGTCAGAAATGGTGATGGCACCGGCGGATACAAGAGGGAGCACGAGAGCAACGCCGACAGACCCAGCGACGATGACGAAAATGGATCGAGTCGAAAGAAACTCCGTCTGTCTAAGGAACAATCTGCTTTCCTGGAAGAGAGCTTCAAAGAACATGCCACTCTCAATCCCAAGCAGAAACTCTCACTGGCAAAGCAGTTAAACCTTCGCCCCCGTCAAGTGGAAGTTTGGTTCCAAAATAGACGGGCTAGGACGAAATTGAAGCAGACGGAAGTAGATTGTGAGTATTTAAAGAGATGTTGCGAGACGCTGACGGAGGAGAATCGGAGGTTACAGAAGGAGGTGCAAGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCCTCCTGTGAAAGGGTCGTTACCAAATCTTCGGCCGCCGGAACCACATCTACCGCGACGGCGACCGCCACTTGTACCGGCGGTGCTTCTGGAATCCCAATCTCTTTGTCTCTCGGAAGGCCCGGAATGCTACCTTTCGCTAATGGTCAAGCCTAG 975 0.5292 MELALSLGDAPKPFSFLDKVTDKHGQEPGFCIPLVAGFAAKRWNHRDSDEDSRSSSGPPVQLDLLSLTPLPPPPSRLSIPWLSRPLGGEEISLDRAVASRGLDVNSAPSDVDEADDAAALSSPNSGISSFHMDFRVRNGDGTGGYKREHESNADRPSDDDENGSSRKKLRLSKEQSAFLEESFKEHATLNPKQKLSLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCERVVTKSSAAGTTSTATATATCTGGASGIPISLSLGRPGMLPFANGQA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3166 324 Pfam HD-ZIP protein N terminus 90 130 IPR006712 GO:0005634
Prci1g3166 324 CDD homeodomain 166 223 IPR001356 GO:0003677
Prci1g3166 324 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Prci1g3166 324 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Prci1g3166 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 61 296 - -
Prci1g3166 324 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Prci1g3166 324 MobiDBLite consensus disorder prediction 104 171 - -
Prci1g3166 324 Pfam Homeodomain 166 220 IPR001356 GO:0003677
Prci1g3166 324 Coils Coil 228 258 - -
Prci1g3166 324 FunFam Homeobox-leucine zipper protein 18 150 227 - -
Prci1g3166 324 Gene3D - 158 227 - -
Prci1g3166 324 SMART HOX_1 164 226 IPR001356 GO:0003677
Prci1g3166 324 MobiDBLite consensus disorder prediction 140 171 - -
Prci1g3166 324 SUPERFAMILY Homeodomain-like 156 223 IPR009057 -
Prci1g3166 324 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Prci1g3166 324 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3166 Prci-Chr1 49644357 49646790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3166 74 278 Homeobox Transcription Factor Family AT3G60390 58.036 3.01e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g3166 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3166 K09338 - jre:109011942 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3166 1 49644357 49646790 Prci3g2671 3 39256569 39258292 CCT
Prci1g3166 1 49644357 49646790 Prci1g3166 1 49644357 49646790 ECH