Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3165 ATGGAGTTGGCTTTGAGCTTGGGAGACGCGCCGAAGCCCTTCTCTTTTCTTGACAAGGTCACCGACAAGCACGGCCAAGAACCTGGCTTTTGCATACCCCTCGTCGCTGGTTTCGCGGCCAAAAGATGGAATCACAGAGACAGCGATGAGGACAGTAGGAGTTCATCAGGTCCGCCAGTTCAGCTCGATCTTCTTTCCTTGACCCCGCTTCCTCCTCCACCTTCACGCCTTTCAATTCCTTGGCTCTCCCGTCCGTGCGGTGAAGAGATTTCATTGGATAGAGCGGTAGCTTCGAGGGGTTTGGATGTGAACAGTGCGCCGTCGGACGTAGATGAAGCCGACGACGCTGCCGCACTCTCATCCCCGAACAGTGGGATCTCATCATTTCACATGGATTTCCGTGTCAGAAATGGTGATGGCACCGGCGGATACAAGAGGGAGCACGAGAGCAACGCCGACAGACCCAGCGACGATGACGAAAATGGATCGAGTCGAAAGAAACTCCGTCTGTCTAAGGAACAATCTGCTTTCCTGGAAGAGAGCTTCAAAGAACATGCCACTCTCAATCCCAAGCAGAAACTCTCACTGGCAAAGCAGTTAAACCTTCGCCCCCGTCAAGTGGAAGTTTGGTTCCAAAATAGACGGGCTAGGACGAAATTGAAGCAGACGGAAGTAGATTGTGAGTATTTAAAGAGATGTTGCGAGACGCTGACGGAGGAGAATCGGAGGTTACAGAAGGAGGTGCAAGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCCTCCTGTGAAAGGGTCGTTACCAAATCTTCGGCCGCCGGAACCACATCTACCGCGACGGCGACCGCCACTTGTACCGGCGGTGCTTCTGGAATCCCAATCTCTTTGTCTCTCGGAAGGCCCGGAATGCTACCTTTCGCTAATGGTCAAGCCTAG 972 0.5298 MELALSLGDAPKPFSFLDKVTDKHGQEPGFCIPLVAGFAAKRWNHRDSDEDSRSSSGPPVQLDLLSLTPLPPPPSRLSIPWLSRPCGEEISLDRAVASRGLDVNSAPSDVDEADDAAALSSPNSGISSFHMDFRVRNGDGTGGYKREHESNADRPSDDDENGSSRKKLRLSKEQSAFLEESFKEHATLNPKQKLSLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCERVVTKSSAAGTTSTATATATCTGGASGIPISLSLGRPGMLPFANGQA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3165 323 SUPERFAMILY Homeodomain-like 155 222 IPR009057 -
Prci1g3165 323 Pfam Homeobox associated leucine zipper 221 255 IPR003106 GO:0006355|GO:0043565
Prci1g3165 323 Pfam HD-ZIP protein N terminus 89 129 IPR006712 GO:0005634
Prci1g3165 323 ProSiteProfiles 'Homeobox' domain profile. 161 221 IPR001356 GO:0003677
Prci1g3165 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 60 295 - -
Prci1g3165 323 MobiDBLite consensus disorder prediction 103 170 - -
Prci1g3165 323 SMART HOX_1 163 225 IPR001356 GO:0003677
Prci1g3165 323 Coils Coil 227 257 - -
Prci1g3165 323 ProSitePatterns 'Homeobox' domain signature. 196 219 IPR017970 GO:0000981|GO:0006355
Prci1g3165 323 CDD homeodomain 165 222 IPR001356 GO:0003677
Prci1g3165 323 SMART halz 221 264 IPR003106 GO:0006355|GO:0043565
Prci1g3165 323 Gene3D - 169 219 - -
Prci1g3165 323 FunFam Homeobox-leucine zipper protein 18 149 226 - -
Prci1g3165 323 MobiDBLite consensus disorder prediction 139 170 - -
Prci1g3165 323 MobiDBLite consensus disorder prediction 45 72 - -
Prci1g3165 323 Pfam Homeodomain 165 219 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3165 Prci-Chr1 49644357 49646797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3165 74 277 Homeobox Transcription Factor Family AT3G60390 57.848 1.34e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g3165 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3165 K09338 - qsa:O6P43_005825 344.739