Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3153 ATGGACAAGTCAGACAGAGAGACTCATGACTTCATGAACGTCCAGTCCTTCTCCCAGCTCCCCTTCATCCGCCCTCCTCCTCTCAAAGAGAAGCCCCTCAAGCTTTTCGGCATTGAATTCCCCAACTCCGACTCTTCTTCTTCCCCCGATGATGCCCCTTCCACCACCGCCCCCAATAACGCCTTCGACCTCGATTCCAAGGACTCCGCCGCCCCCGACAACAACTCCGACACCACCCGCCGATTTGAATGCCATTACTGTTGTCGAAACTTCCCCACTTCTCAAGCCCTGGGTGGCCACCAGAACGCCCATAAACGAGAGCGTCAGCACGCCAAGCGAACCCACCTTCAGTCTGCCATGGTGCACAATAGCCTCTCGGTCGACGCCGCCGCCGCCGCCCATGCCTACGGCCTCGTCAACTACCGCCTCGGCTCTGCTCCCTATCCCTCCTCTGCCGCTGGAAGGTTCTTTGGAACCCACGGCGCTAGCTCCTATCCTCACCTGCAGCCCATCAACGGTAGCCCCTTGGCCTTGTGGCGGATCCCCGCCGTCCACAATAACCCCGCTGCTTTCAACCGTGACCAGTCGTTGCACTCGCAGCATCCGTTGCCCTTGCTTGCCGGCGACGAAATTAACGTCGGGGCTCCTCAAGTCGTTGGTTCCGCTTCGCAGAATCGCCTCGTTTATGACTCTAAACCCGGCGTTCACGACCATGTGAGTTTGGATCTTCATCTGTAA 738 0.584 MDKSDRETHDFMNVQSFSQLPFIRPPPLKEKPLKLFGIEFPNSDSSSSPDDAPSTTAPNNAFDLDSKDSAAPDNNSDTTRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRTHLQSAMVHNSLSVDAAAAAHAYGLVNYRLGSAPYPSSAAGRFFGTHGASSYPHLQPINGSPLALWRIPAVHNNPAAFNRDQSLHSQHPLPLLAGDEINVGAPQVVGSASQNRLVYDSKPGVHDHVSLDLHL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3153 245 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Prci1g3153 245 SUPERFAMILY beta-beta-alpha zinc fingers 79 110 IPR036236 -
Prci1g3153 245 Pfam C2H2-type zinc finger 81 106 - -
Prci1g3153 245 Gene3D Classic Zinc Finger 60 135 - -
Prci1g3153 245 PANTHER ZINC FINGER PROTEIN GIS 1 245 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Prci1g3153 245 MobiDBLite consensus disorder prediction 1 76 - -
Prci1g3153 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Prci1g3153 245 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3153 Prci-Chr1 49536705 49537985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3153 1 245 C2H2 Transcription Factor Family AT3G58070 42.857 9.46e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3153 - - tcc:18599153 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3153 1 49536705 49537985 Prci3g2685 3 39366942 39370317 CCT
Prci1g3153 1 49536705 49537985 Prci1g3153 1 49536705 49537985 ECH