Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3120 ATGGAGTCTCAGGCGAAGCATGCCGTGGTCGTTAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTAACTCAGGTTAGAGTCAAGTTTTTGGATGATCACAACCGGTACATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGATATTCTCACCCTTCTTGAGTCTGAAAGAGAAGCAAGGAGGTTGCGCTAG 198 0.4798 MESQAKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3120 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci1g3120 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci1g3120 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Prci1g3120 65 Gene3D - 1 65 IPR012340 -
Prci1g3120 65 FunFam 40S ribosomal protein S28 1 65 - -
Prci1g3120 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci1g3120 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Prci1g3120 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3120 Prci-Chr1 49364978 49366351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3120 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 2.78e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3120 K02979 - csv:101212501 99.7525