Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3080 ATGGAGGTTCCGGACATGGAAGACAAGAACAATGGAAGTCGTATGACATCAGCTGCAGCATTCGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCTTCAACGGTTACTACTTGCAAGCATGACTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACCAGTCAAGAATTATTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGTTACTTCTTCAAGAAATGCAGCTGTTTTCCATCATCTGGGTCTTGGTGGTTTTGACTTGCAGCATTTATCCATGGGAGTAAGTGAAGCAGATATTGAAGAGAGGATAATGCAACATTTAGCTGCTGCTACAGCCATGGGAAGAGCTCGCCACCTTGGTCGGAGAGAAGGAAATAGGACTAGATCATATCCTCATGGTCGTCCTCCCTTCATAGTGTTCTCAACTCCTCCACCTGGTGCTGTCTCTGCTGCTGGAGGGGGGACCGAACCAACTGCAATTCCTGTAATAAATCCGTCCACCCCTCTTACATCTGAAAGAGATGAACAATCACAGCAGATCCCAAACCTTCAAACACAGGGTTCTTTACCTGCTGGATCTACTGTCACGGAGGCAAATCGTCAAGGAATTCTTTTTAATGATCGCTCCGCTGTCCATTCTGTGCCTCCTGACCAGGGCAGAGCAGGACCATCAGAACTTCAGTCATTTTCCGAGTCTCTGCGATCCAGACTTGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAAGGGCGCAAGGGGATGGAGGGAAAAGCTGTTCTCTCGTAGTACGTCCATGTCTGATATTGGTTCAGAAGTTAGGAGAGAGTTGAACGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAACAGAATGATAGGGCAGGGGATAGCTCTTTGTCAAATCATTTGGCTGCAGAGACAAGCAACCCAAACAATGCCGAAGCTCGTGAGATTAATGCTCTGCGTGACAACGCTCCAGCTGCTTGTTCTGCTGGCCCACGTTCAGACTGA 1125 0.472 MEVPDMEDKNNGSRMTSAAAFVEGGIQEACDDSCSICLEDFSESNPSTVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFEAVVQERNLRVTSSRNAAVFHHLGLGGFDLQHLSMGVSEADIEERIMQHLAAATAMGRARHLGRREGNRTRSYPHGRPPFIVFSTPPPGAVSAAGGGTEPTAIPVINPSTPLTSERDEQSQQIPNLQTQGSLPAGSTVTEANRQGILFNDRSAVHSVPPDQGRAGPSELQSFSESLRSRLGSVSMRYKETISKGARGWREKLFSRSTSMSDIGSEVRRELNAGIASVSRLMERLETREQNDRAGDSSLSNHLAAETSNPNNAEAREINALRDNAPAACSAGPRSD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3080 374 SMART ring_2 34 74 IPR001841 -
Prci1g3080 374 MobiDBLite consensus disorder prediction 154 173 - -
Prci1g3080 374 SUPERFAMILY RING/U-box 26 82 - -
Prci1g3080 374 Coils Coil 306 326 - -
Prci1g3080 374 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Prci1g3080 374 MobiDBLite consensus disorder prediction 239 259 - -
Prci1g3080 374 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 82 - -
Prci1g3080 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 84 IPR013083 -
Prci1g3080 374 MobiDBLite consensus disorder prediction 324 374 - -
Prci1g3080 374 MobiDBLite consensus disorder prediction 334 353 - -
Prci1g3080 374 Pfam Ring finger domain 32 74 IPR001841 -
Prci1g3080 374 MobiDBLite consensus disorder prediction 196 225 - -
Prci1g3080 374 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 12 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3080 Prci-Chr1 49185022 49189278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3080 31 82 C3H Transcription Factor Family AT4G00335 48.077 6.52e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3080 K19043 - qsa:O6P43_005750 477.248