Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3079 ATGGAAGACAAGAACAATGGAAGTCGTATGACATCAGCTGCAGCATTCGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCTTCAACGGTTACTACTTGCAAGCATGACTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACCAGTCAAGAATTATTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGTTACTTCTTCAAGAAATGCAGCTGTTTTCCATCATCTGGGTCTTGGTGGTTTTGACTTGCAGCATTTATCCATGGGAGTAAGTGAAGCAGATATTGAAGAGAGGATAATGCAACATTTAGCTGCTGCTACAGCCATGGGAAGAGCTCGCCACCTTGGTCGGAGAGAAGGAAATAGGACTAGATCATATCCTCATGGTCGTCCTCCCTTCATAGTGTTCTCAACTCCTCCACCTGGTGCTGTCTCTGCTGCTGGAGGGGGGACCGAACCAACTGCAATTCCTGTAATAAATCCGTCCACCCCTCTTACATCTGAAAGAGATGAACAATCACAGCAGATCCCAAACCTTCAAACACAGGGTTCTTTACCTGCTGGATCTACTGTCACGGAGGCAAATCGTCAAGGAATTCTTTTTAATGATCGCAGCTCCGCTGTCCATTCTGTGCCTCCTGACCAGGGCAGAGCAGGACCATCAGAACTTCAGTCATTTTCCGAGTCTCTGCGATCCAGACTTGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAAGGGCGCAAGGGGATGGAGGGAAAAGCTGTTCTCTCGTAGTACGTCCATGTCTGATATTGGTTCAGAAGTTAGGAGAGAGTTGAACGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAACAGAATGATAGGGCAGGGGATAGCTCTTTGTCAAATCATTTGGCTGCAGAGACAAGCAACCCAAACAATGCCGAAGCTCGTGAGATTAATGCTCTGCGTGACAACGCTCCAGCTGCTTGTTCTGCTGGCCCACGTTCAGACTGA 1113 0.4708 MEDKNNGSRMTSAAAFVEGGIQEACDDSCSICLEDFSESNPSTVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFEAVVQERNLRVTSSRNAAVFHHLGLGGFDLQHLSMGVSEADIEERIMQHLAAATAMGRARHLGRREGNRTRSYPHGRPPFIVFSTPPPGAVSAAGGGTEPTAIPVINPSTPLTSERDEQSQQIPNLQTQGSLPAGSTVTEANRQGILFNDRSSAVHSVPPDQGRAGPSELQSFSESLRSRLGSVSMRYKETISKGARGWREKLFSRSTSMSDIGSEVRRELNAGIASVSRLMERLETREQNDRAGDSSLSNHLAAETSNPNNAEAREINALRDNAPAACSAGPRSD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3079 370 Coils Coil 302 322 - -
Prci1g3079 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
Prci1g3079 370 MobiDBLite consensus disorder prediction 191 220 - -
Prci1g3079 370 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Prci1g3079 370 MobiDBLite consensus disorder prediction 149 168 - -
Prci1g3079 370 SMART ring_2 29 69 IPR001841 -
Prci1g3079 370 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 7 79 - -
Prci1g3079 370 Pfam Ring finger domain 27 69 IPR001841 -
Prci1g3079 370 MobiDBLite consensus disorder prediction 235 255 - -
Prci1g3079 370 MobiDBLite consensus disorder prediction 320 370 - -
Prci1g3079 370 MobiDBLite consensus disorder prediction 330 349 - -
Prci1g3079 370 SUPERFAMILY RING/U-box 21 77 - -
Prci1g3079 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3079 Prci-Chr1 49185022 49189279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3079 26 77 C3H Transcription Factor Family AT4G00335 48.077 5.56e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3079 K19043 - qsa:O6P43_005750 473.781