Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3078 ATGGAGGTTCCGGACATGGAAGACAAGAACAATGGAAGTCGTATGACATCAGCTGCAGCATTCGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCTTCAACGGTTACTACTTGCAAGCATGACTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACCAGTCAAGAATTATTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGTTACTTCTTCAAGAAATGCAGCTGTTTTCCATCATCTGGGTCTTGGTGGTTTTGACTTGCAGCATTTATCCATGGGAGTAAGTGAAGCAGATATTGAAGAGAGGATAATGCAACATTTAGCTGCTGCTACAGCCATGGGAAGAGCTCGCCACCTTGGTCGGAGAGAAGGAAATAGGACTAGATCATATCCTCATGGTCGTCCTCCCTTCATAGTGTTCTCAACTCCTCCACCTGGTGCTGTCTCTGCTGCTGGAGGGGGGACCGAACCAACTGCAATTCCTGTAATAAATCCGTCCACCCCTCTTACATCTGAAAGAGATGAACAATCACAGCAGATCCCAAACCTTCAAACACAGGGTTCTTTACCTGCTGGATCTACTGTCACGGAGGCAAATCGTCAAGGAATTCTTTTTAATGATCGCAGCTCCGCTGTCCATTCTGTGCCTCCTGACCAGGGCAGAGCAGGACCATCAGAACTTCAGTCATTTTCCGAGTCTCTGCGATCCAGACTTGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAAGGGCGCAAGGGGATGGAGGGAAAAGCTGTTCTCTCGTAGTACGTCCATGTCTGATATTGGTTCAGAAGTTAGGAGAGAGTTGAACGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAACAGAATGATAGGGCAGGGGATAGCTCTTTGTCAAATCATTTGGCTGCAGAGACAAGCAACCCAAACAATGCCGAAGCTCGTGAGATTAATGCTCTGCGTGACAACGCTCCAGCTGCTTGTTCTGCTGGCCCACGTTCAGACTGA 1128 0.4725 MEVPDMEDKNNGSRMTSAAAFVEGGIQEACDDSCSICLEDFSESNPSTVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFEAVVQERNLRVTSSRNAAVFHHLGLGGFDLQHLSMGVSEADIEERIMQHLAAATAMGRARHLGRREGNRTRSYPHGRPPFIVFSTPPPGAVSAAGGGTEPTAIPVINPSTPLTSERDEQSQQIPNLQTQGSLPAGSTVTEANRQGILFNDRSSAVHSVPPDQGRAGPSELQSFSESLRSRLGSVSMRYKETISKGARGWREKLFSRSTSMSDIGSEVRRELNAGIASVSRLMERLETREQNDRAGDSSLSNHLAAETSNPNNAEAREINALRDNAPAACSAGPRSD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3078 375 SMART ring_2 34 74 IPR001841 -
Prci1g3078 375 MobiDBLite consensus disorder prediction 154 173 - -
Prci1g3078 375 MobiDBLite consensus disorder prediction 335 354 - -
Prci1g3078 375 SUPERFAMILY RING/U-box 26 82 - -
Prci1g3078 375 MobiDBLite consensus disorder prediction 240 260 - -
Prci1g3078 375 Coils Coil 307 327 - -
Prci1g3078 375 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Prci1g3078 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 84 IPR013083 -
Prci1g3078 375 Pfam Ring finger domain 32 74 IPR001841 -
Prci1g3078 375 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 82 - -
Prci1g3078 375 MobiDBLite consensus disorder prediction 325 375 - -
Prci1g3078 375 MobiDBLite consensus disorder prediction 196 225 - -
Prci1g3078 375 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 12 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3078 Prci-Chr1 49185022 49189279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3078 31 82 C3H Transcription Factor Family AT4G00335 48.077 6.62e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3078 K19043 - gmx:100803582 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3078 1 49185022 49189279 Prci1g3078 1 49185022 49189279 ECH