Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3056 ATGCAAACTGTTTATTTCAAAGAAGCTCAAGGAGCTACCCACAATTCCGCTGGGCATATGTCATCTGTAACTTCGGCCCCGTGGTGGAGTACGTTAGGGTCCCAAACAATTTTTGGCGAGTCTTGTGGCCAAATGAAAGCTTTTTCGCTGGAGATTCCCAGCCATGTAGACCAACTTGTTGCCACTAAGCAAGCGGGAAGAGGAGCTGAACAAGTGTTTGATAAAGGAAACACCACTGAGCTCGCTATCTTTTCAGATGATTGTAAAATGTCAGGTGATCAGAAGTCTCAGACTGGCATATCACTTCAGTCATCAATTCCTGATCCGCGCGCTCATGTTGAGCTAGGAATCAATCAGCCTGTGATCTGCGCAAAGTATCCTTATATGGATCATTTTTATGGGATCGTCTCAACTTATGGACCTCAAATTCCGGGCCGTATGATGCTGCCACTTAACATGGCATCTGATGATGGACCGATTTATGTTAATGCTAAGCAGTACCATGGAATCATCCGACGTCGGCAGTCCCGAGCAAAGGCTGTGCTGGAGAATAAAATGACCAAACGTCGTAAGCCTTATATGCATGAATCACGCCATCTCCATGCAATGCGCCGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAGAACTTGAATGACAGCGATGCAAAATTTGGAAGTGAAGGGAATAAAACTGGGGATGGTCAATTGCAGTCTACTGGTTCTCAGAGCTCTGAAGTGCTGCAATCATCAAAGGAAACAAGTGGAAGCAGTCCGCACATGTCTGGGTCAGAGGTGACTAGCATGTATACAAGGGGAGGTCTTGACCATGGCTTTACGTTCAACTATCTTGGACCAGCTGTTCATCACACTCTTGCAGGCATGATGAATAATCAGAGTGGCAGTGGCGGCATAGTTATGCCCGCCAAATGGGTTGCAGCACCAGGTAAATGCTGCAGCCTTGAAGTTTGA 975 0.4667 MQTVYFKEAQGATHNSAGHMSSVTSAPWWSTLGSQTIFGESCGQMKAFSLEIPSHVDQLVATKQAGRGAEQVFDKGNTTELAIFSDDCKMSGDQKSQTGISLQSSIPDPRAHVELGINQPVICAKYPYMDHFYGIVSTYGPQIPGRMMLPLNMASDDGPIYVNAKQYHGIIRRRQSRAKAVLENKMTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNLNDSDAKFGSEGNKTGDGQLQSTGSQSSEVLQSSKETSGSSPHMSGSEVTSMYTRGGLDHGFTFNYLGPAVHHTLAGMMNNQSGSGGIVMPAKWVAAPGKCCSLEV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3056 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 159 213 IPR001289 GO:0003700|GO:0006355
Prci1g3056 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 57 265 IPR001289 GO:0003700|GO:0006355
Prci1g3056 324 PRINTS CCAAT-binding transcription factor subunit B signature 190 213 IPR001289 GO:0003700|GO:0006355
Prci1g3056 324 PRINTS CCAAT-binding transcription factor subunit B signature 159 181 IPR001289 GO:0003700|GO:0006355
Prci1g3056 324 SMART cbf3 155 216 IPR001289 GO:0003700|GO:0006355
Prci1g3056 324 MobiDBLite consensus disorder prediction 220 270 - -
Prci1g3056 324 Gene3D - 156 218 - -
Prci1g3056 324 ProSiteProfiles NF-YA/HAP2 family profile. 156 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3056 Prci-Chr1 49053710 49058664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3056 25 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.049 1.06e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci1g3056 CBFB_NFYA 9.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3056 K08064 - gmx:100527677 427.172