Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci1g3054 | ATGGCTGCTGCAGCCACTGCTTCCTCTTCCGTCTGCAATCGACTCCATAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTTTCAGACCCTTTTCTCATAAACCTCCCACCCTCAATCTCAAACCCCACCTCCTCAATTCCTCTACTCTCTCGCTCTATCATCTTCGTTTGGCTTCCGCTGCCTTCGACGGATTCGAAGTCGCTGAAGACAGCACAGGCGCTGAGCAGGAAGAACCAGAACCCTCTGAAAAATCAGAACAAGACGAGGATGACCAAAAGGTATCAGACTCGAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCCCATTTGTCTGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATACGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGTGCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCCCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGCGAAAGACTAGTGATGGGGCCAAAAGTGAGGAATAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGAAACCTTGGTTGGGGATTGACTTCACAGGGTCTGAGAGATGCATTTGCTGGTCAGCCAGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACCGGAAGATCTCGAGGCTTTGGGTTTGTCTCTTTTGAAACTGCTGAGGACGTTGAGGCTGCTTTGAACGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTTTGAGACTGAATTTGGCTGCAGATAGGACAAGTGTATCTCCTCCATCAATGGATGAAACTGCACAAGGTAATGTTGATAGCTCGGAATTGGTGTCTAGCGTCAGCACATGA | 948 | 0.4863 | MAAAATASSSVCNRLHSLYVTPSSFSITLKFPFRPFSHKPPTLNLKPHLLNSSTLSLYHLRLASAAFDGFEVAEDSTGAEQEEPEPSEKSEQDEDDQKVSDSNEAGRLYVGNLPFSMTSSHLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRALRLNLAADRTSVSPPSMDETAQGNVDSSELVSSVST | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci1g3054 | 315 | Gene3D | - | 194 | 295 | IPR012677 | - | |
Prci1g3054 | 315 | MobiDBLite | consensus disorder prediction | 75 | 90 | - | - | |
Prci1g3054 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 178 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 211 | 281 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | FunFam | 33 kDa ribonucleoprotein, chloroplastic | 191 | 295 | - | - | |
Prci1g3054 | 315 | PANTHER | OS02G0815200 PROTEIN | 48 | 288 | - | - | |
Prci1g3054 | 315 | CDD | RRM1_PSRP2_like | 107 | 186 | - | - | |
Prci1g3054 | 315 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | SMART | rrm1_1 | 210 | 283 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | Gene3D | - | 67 | 189 | IPR012677 | - | |
Prci1g3054 | 315 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 290 | IPR035979 | GO:0003676 | |
Prci1g3054 | 315 | MobiDBLite | consensus disorder prediction | 73 | 102 | - | - | |
Prci1g3054 | 315 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 183 | IPR035979 | GO:0003676 | |
Prci1g3054 | 315 | CDD | RRM2_NsCP33_like | 210 | 285 | - | - | |
Prci1g3054 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 287 | IPR000504 | GO:0003723 | |
Prci1g3054 | 315 | MobiDBLite | consensus disorder prediction | 288 | 315 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci1g3054 | Prci-Chr1 | 49048785 | 49050857 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci1g3054 | 108 | 285 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 31.868 | 6.06e-19 | 85.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci1g3054 | - | - | qsa:O6P43_009680 | 427.943 |