Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3054 ATGGCTGCTGCAGCCACTGCTTCCTCTTCCGTCTGCAATCGACTCCATAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTTTCAGACCCTTTTCTCATAAACCTCCCACCCTCAATCTCAAACCCCACCTCCTCAATTCCTCTACTCTCTCGCTCTATCATCTTCGTTTGGCTTCCGCTGCCTTCGACGGATTCGAAGTCGCTGAAGACAGCACAGGCGCTGAGCAGGAAGAACCAGAACCCTCTGAAAAATCAGAACAAGACGAGGATGACCAAAAGGTATCAGACTCGAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCCCATTTGTCTGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATACGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGTGCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCCCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGCGAAAGACTAGTGATGGGGCCAAAAGTGAGGAATAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGAAACCTTGGTTGGGGATTGACTTCACAGGGTCTGAGAGATGCATTTGCTGGTCAGCCAGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACCGGAAGATCTCGAGGCTTTGGGTTTGTCTCTTTTGAAACTGCTGAGGACGTTGAGGCTGCTTTGAACGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTTTGAGACTGAATTTGGCTGCAGATAGGACAAGTGTATCTCCTCCATCAATGGATGAAACTGCACAAGGTAATGTTGATAGCTCGGAATTGGTGTCTAGCGTCAGCACATGA 948 0.4863 MAAAATASSSVCNRLHSLYVTPSSFSITLKFPFRPFSHKPPTLNLKPHLLNSSTLSLYHLRLASAAFDGFEVAEDSTGAEQEEPEPSEKSEQDEDDQKVSDSNEAGRLYVGNLPFSMTSSHLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRALRLNLAADRTSVSPPSMDETAQGNVDSSELVSSVST 315
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3054 315 Gene3D - 194 295 IPR012677 -
Prci1g3054 315 MobiDBLite consensus disorder prediction 75 90 - -
Prci1g3054 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Prci1g3054 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 281 IPR000504 GO:0003723
Prci1g3054 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Prci1g3054 315 FunFam 33 kDa ribonucleoprotein, chloroplastic 191 295 - -
Prci1g3054 315 PANTHER OS02G0815200 PROTEIN 48 288 - -
Prci1g3054 315 CDD RRM1_PSRP2_like 107 186 - -
Prci1g3054 315 SMART rrm1_1 107 180 IPR000504 GO:0003723
Prci1g3054 315 SMART rrm1_1 210 283 IPR000504 GO:0003723
Prci1g3054 315 Gene3D - 67 189 IPR012677 -
Prci1g3054 315 SUPERFAMILY RNA-binding domain, RBD 206 290 IPR035979 GO:0003676
Prci1g3054 315 MobiDBLite consensus disorder prediction 73 102 - -
Prci1g3054 315 SUPERFAMILY RNA-binding domain, RBD 103 183 IPR035979 GO:0003676
Prci1g3054 315 CDD RRM2_NsCP33_like 210 285 - -
Prci1g3054 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Prci1g3054 315 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci1g3054 Prci-Chr1 49048785 49050857 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3054 108 285 Eukaryotic Initiation Factors Gene Family AT3G16380 31.868 6.06e-19 85.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3054 - - qsa:O6P43_009680 427.943