Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3053 ATGGCTGCTGCAGCCACTGCTTCCTCTTCCGTCTGCAATCGACTCCATAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTTTCAGACCCTTTTCTCATAAACCTCCCACCCTCAATCTCAAACCCCACCTCCTCAATTCCTCTACTCTCTCGCTCTATCATCTTCGTTTGGCTTCCGCTGCCTTCGACGGATTCGAAGTCGCTGAAGACAGCACAGGCGCTGAGCAGGAAGAACCAGAACCCTCTGAAAAATCAGAACAAGACGAGGATGACCAAAAGGTATCAGACTCGAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCCCATTTGTCTGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGCGAAAGACTAGTGATGGGGCCAAAAGTGAGGAATAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGAAACCTTGGTTGGGGATTGACTTCACAGGGTCTGAGAGATGCATTTGCTGGTCAGCCAGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACCGGAAGATCTCGAGGCTTTGGGTTTGTCTCTTTTGAAACTGCTGAGGACGTTGAGGCTGCTTTGAACGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTTTGAGACTGAATTTGGCTGCAGATAGGACAAGTGTATCTCCTCCATCAATGGATGAAACTGCACAAGGTAATGTTGATAGCTCGGAATTGGTGTCTAGCGTCAGCACATGA 846 0.4894 MAAAATASSSVCNRLHSLYVTPSSFSITLKFPFRPFSHKPPTLNLKPHLLNSSTLSLYHLRLASAAFDGFEVAEDSTGAEQEEPEPSEKSEQDEDDQKVSDSNEAGRLYVGNLPFSMTSSHLSEIFQEAGNVVSVEQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRALRLNLAADRTSVSPPSMDETAQGNVDSSELVSSVST 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3053 281 MobiDBLite consensus disorder prediction 75 90 - -
Prci1g3053 281 Gene3D - 68 146 IPR012677 -
Prci1g3053 281 FunFam 33 kDa ribonucleoprotein, chloroplastic 157 261 - -
Prci1g3053 281 PANTHER OS02G0815200 PROTEIN 48 136 - -
Prci1g3053 281 Gene3D - 161 264 IPR012677 -
Prci1g3053 281 CDD RRM2_NsCP33_like 176 251 - -
Prci1g3053 281 MobiDBLite consensus disorder prediction 254 281 - -
Prci1g3053 281 SUPERFAMILY RNA-binding domain, RBD 89 137 IPR035979 GO:0003676
Prci1g3053 281 SMART rrm1_1 176 249 IPR000504 GO:0003723
Prci1g3053 281 SMART rrm1_1 107 172 IPR000504 GO:0003723
Prci1g3053 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 247 IPR000504 GO:0003723
Prci1g3053 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 136 IPR000504 GO:0003723
Prci1g3053 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 253 IPR000504 GO:0003723
Prci1g3053 281 SUPERFAMILY RNA-binding domain, RBD 172 256 IPR035979 GO:0003676
Prci1g3053 281 MobiDBLite consensus disorder prediction 73 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3053 Prci-Chr1 49048785 49050859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3053 106 255 Eukaryotic Initiation Factors Gene Family AT1G22760 24.713 3.35e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3053 - - qsa:O6P43_009680 352.829