Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g3047 | ATGAACGACCTGTTCTCCGGCTCCTTCTCCCGCTTCCGCGGTGAACAGGTCTCGCCGGACAACCAGCACCACGTCATCCAGATGACGGACACATCGCCGTCGAGGGACGGAGTCAACCTCGACAAATTCTTCTCGGAAGTGGAGTCCGTCAAGGAGGAGCTCAAGGAGTTGGAGAGGCTCAACCAGAGCCTCCGTGGATCCCACGAACAGAGCAAGACCCTCCACACAGCCGACACCGTCAAGGAGCTTCGGTCTCGCATGGACACCGACGTGGCCCTCGCTCTCAAGAAAGCTAAGGTCATCAAGGTCCGCCTGGAAGCACTGGACCGCTCCAACGAAGCCAACCGGATCTTGCCGGGCTGCGGACCCGGCTCTTCGTCCGACCGGACTCGGACATCCGTCGTGAGCGGGCTGAGAAAAAAGCTGAAAGACTCCATGGACAGCTTCAACAACCTGAGAGAAAAGATATCGTCGGAGTACAGGGAAACCGTGCAGCGTAGGTACTTCACAGTCACCGGCGAGAATCCCGACGACAGAACCATCGACCTGCTCATCTCGACTGGTGAGAGCGAAACATTCTTGAAGAAGGCGATACAAGAGCAGGGGAGGGCGAGCATAGTGGAGACGATAAAGGAGATTCAAGAGAGGAATGACGCGGTGAGGGAGATAGAAAGGAACCTGAAGGAACTGCACCAAGTGTTCATGGACATGGCGGTGTTGGTGCAGTCGCAAGGGGAACAATTGGAAGATATAGAGAGCCACATGGCTCGAGCTAATTCCTTCGTGAGGAGTGGAGTTCGCCAGCTCCATGTTGCTAAGCAGCACCAGAAAAAGTCCCGCAAATGGACTTGTTTTGCCATCTTACTGCTCCTCATTATCGTCTTAATTATACTTCTCCCCATTCTTCTCAGAAACTGA | 918 | 0.5458 | MNDLFSGSFSRFRGEQVSPDNQHHVIQMTDTSPSRDGVNLDKFFSEVESVKEELKELERLNQSLRGSHEQSKTLHTADTVKELRSRMDTDVALALKKAKVIKVRLEALDRSNEANRILPGCGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLREKISSEYRETVQRRYFTVTGENPDDRTIDLLISTGESETFLKKAIQEQGRASIVETIKEIQERNDAVREIERNLKELHQVFMDMAVLVQSQGEQLEDIESHMARANSFVRSGVRQLHVAKQHQKKSRKWTCFAILLLLIIVLIILLPILLRN | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g3047 | 305 | SMART | tSNARE_6 | 205 | 272 | IPR000727 | - | |
| Prci1g3047 | 305 | Coils | Coil | 40 | 70 | - | - | |
| Prci1g3047 | 305 | FunFam | Syntaxin 132 | 203 | 303 | - | - | |
| Prci1g3047 | 305 | Pfam | SNARE domain | 246 | 298 | IPR000727 | - | |
| Prci1g3047 | 305 | Coils | Coil | 206 | 233 | - | - | |
| Prci1g3047 | 305 | CDD | SynN | 40 | 197 | IPR006011 | GO:0016020 | |
| Prci1g3047 | 305 | Pfam | Syntaxin | 42 | 245 | IPR006011 | GO:0016020 | |
| Prci1g3047 | 305 | SUPERFAMILY | t-snare proteins | 38 | 265 | IPR010989 | GO:0016020|GO:0016192 | |
| Prci1g3047 | 305 | Gene3D | - | 200 | 303 | - | - | |
| Prci1g3047 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 216 | 255 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Prci1g3047 | 305 | Gene3D | - | 38 | 170 | - | - | |
| Prci1g3047 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 210 | 272 | IPR000727 | - | |
| Prci1g3047 | 305 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 37 | 167 | - | - | |
| Prci1g3047 | 305 | CDD | SNARE_syntaxin1-like | 209 | 269 | - | - | |
| Prci1g3047 | 305 | SMART | SynN_4 | 35 | 161 | IPR006011 | GO:0016020 | |
| Prci1g3047 | 305 | PANTHER | SYNTAXIN | 43 | 295 | IPR045242 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g3047 | Prci-Chr1 | 49040621 | 49041950 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g3047 | 28 | 284 | SNARE and Associated Proteins | AT3G11820 | 73.541 | 1.34e-139 | 395 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g3047 | K08486 | - | qsa:O6P43_006031 | 430.254 |