Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3046 ATGAATGACTTGTTCTCTGGCTCCTTCTCTCGCTTCCGTGGCGTGGAATCTTCGCCGGACCATCACCAGCAGCACCATGTCATCGAGATGGGTTCCGTCGAGGTCTCCTCTGAAGGCGGCGACCTCCACAAGTTCTTCCAAGACGTAGAATCTATAAAGGACGAGCTGAAAGAGCTCCAAAGACTGAACCGGAATCTGCAGAGCTCTCACGAGCAGAACAAGACCCTTCACAATGCCAAGGCCGTCAAGGACCTTCGCTCTCAAATGGACAGCGACGTCGCTCTTGCTCTAAAGAAGGCGAAGCTCGTCAAGGTCAAATTGGAGGCACTGGAGCGATCCAACGCCGCCAGCCGGAGCCTTCCCGATTGCGGACCCGGGTCGTCGTCCGACCGGACTCGGACGTCCGTGGTGAACGGTTTGAGGAAGAACCTGAAGGACTCCATGGACAGTTTCAATGAACTCAGGCAGCGGATCTCCTCCGAGTACCGGGAGACCGTGCAACGCAGGTATTTCACGGTTACCGGCGAGAATCCCGACGACAAGACCATCGACCTCCTGATTTCTACAGGTGAGAGCGAGACATTCCTTCGGAAAGCCATCCAGGAGCAAGGCAGGGGAAGAATTCTGGACACCATTAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCGTGGACATGGCAGTACTGGTGCAGTCCCAAGGAGAGCAATTGGATGATATTGAGAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAAAGTGGGGCCCAGCAGTTACAGACAGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTACGTAATCACGCTTCTGCTCGTGATTATCTTGCTCGTGGTGCTCTTCACTGTGAGGCCATGGCAAAATAATAGCAGTAGTTCGTCAGCATCACCGCAAACACCTGCACCACCACCACCTCCTCCTGCTGCTTGA 993 0.5368 MNDLFSGSFSRFRGVESSPDHHQQHHVIEMGSVEVSSEGGDLHKFFQDVESIKDELKELQRLNRNLQSSHEQNKTLHNAKAVKDLRSQMDSDVALALKKAKLVKVKLEALERSNAASRSLPDCGPGSSSDRTRTSVVNGLRKNLKDSMDSFNELRQRISSEYRETVQRRYFTVTGENPDDKTIDLLISTGESETFLRKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFVDMAVLVQSQGEQLDDIESHVARASSFVKSGAQQLQTARKHQKNTRKWTCYVITLLLVIILLVVLFTVRPWQNNSSSSSASPQTPAPPPPPPAA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3046 330 CDD SNARE_syntaxin1-like 211 273 - -
Prci1g3046 330 Coils Coil 137 157 - -
Prci1g3046 330 PANTHER SYNTAXIN 54 296 IPR045242 -
Prci1g3046 330 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Prci1g3046 330 CDD SynN 44 199 IPR006011 GO:0016020
Prci1g3046 330 Gene3D - 40 172 - -
Prci1g3046 330 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci1g3046 330 MobiDBLite consensus disorder prediction 310 330 - -
Prci1g3046 330 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Prci1g3046 330 FunFam Syntaxin 132 205 305 - -
Prci1g3046 330 SMART SynN_4 37 163 IPR006011 GO:0016020
Prci1g3046 330 Coils Coil 212 235 - -
Prci1g3046 330 Gene3D - 209 305 - -
Prci1g3046 330 MobiDBLite consensus disorder prediction 120 134 - -
Prci1g3046 330 MobiDBLite consensus disorder prediction 114 134 - -
Prci1g3046 330 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Prci1g3046 330 SMART tSNARE_6 207 274 IPR000727 -
Prci1g3046 330 Pfam SNARE domain 248 300 IPR000727 -
Prci1g3046 330 Coils Coil 42 79 - -
Prci1g3046 330 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3046 Prci-Chr1 49037469 49039446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3046 30 329 SNARE and Associated Proteins AT3G11820 70.323 1.31e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3046 K08486 - cave:132191796 477.633