Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3039 ATGGATGAGACTATTGAAGTTCCTCCCTTCTTTTTGTGCCCCATCTCCTTGGAAATCATGAAGGATCCCATCACCGTCTCCTCCGGGATCACCTACGACAGAGAGAGCATCGAGAAATGGCTCTTCTCGGGCAAAAACAAGTCATGCCCCGTCACCAAACAGCAGCTCTCAGTATCGGACTCCTCCGACCTTACTCCCAACCACACCCTTCGTCGTCTGATTCAATCCTGGTGTACCATGAACGCTTCTCACGGCATCCAAAGGATTCCGACGCCTAAACCTCCCATCACCAAAACCCAAGTCGCCAAGATCATTAGAGACGCTTCTCAGTCTTCTCATTCGCCTGTTAAATGCCTCCAAACACTCAAATCCATTGCTTCCGAAAGCGACGCTAATAAACGTAGCATAGAAGCTGCCGGCGCAGTTGAATTCTTGGCATCGATTGTCCTCCGCAACACAGATTTCTCGTATACACCTGAAGAGGACGGTGACGTGTTTGAATTGAAAACGAGCGGAGGTGATGAAGCCTTGAGCATCCTCCACAGCCTCCACCTTTCCGAGGCTGGCTTGAAGACTCTCTTAACCCTCGAAAACCGATCATTCATTGATTGCTTGACCAGAATCATGCAGAGAGGATTCTATGAATCACGGGCTTATGCGGTCTTATTGTTAAAATCGATGTTTGAAGTGGCTGATCCCACGGTTTTATCCCATTTAAAACCTGAAATGTTCGTTGAACTAGTACAACTATTGAAAGACCAGATATCCCAGCAAGCCTCCAAGGCTACTCTAAGAACACTGATCCAAATATGTCCATGGGGCAGAAACAGGTTAAGAGCAGTGGAAGCAGGAGGCGTATCGGTATTGATAGAGCTTCTTCTAGATTGCAAGGACAGGAAGCCATGTGAGATGATGCTGGTGTTGTTGGAGATGCTGTGCGGGTGCGCCGAGGGGAGAGCGGAGCTGCTGAGTCATGGGGCGGGAATCGCCATAGTGTCGAAGAAGATTCTGAGGGTGTCGACGATGGCCAATGATAGGGCCGCGAGGATTCTGTTGTCCATTGCCAAGTTCTCAGCAACTCCGATCGTTTTGCAGGAAATGTTGCAGGTGGGTGTGGTGGCCAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTGGGCGAAAGGCTCAGGACAAAGCCAGAGAGATTCTGAGAATGCATTCTCGGGCTTGGAGGAATTCTCCATGCGTACCCAGCAATTTGCTTTCTTCTTACCCGAATTGA 1260 0.4937 MDETIEVPPFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKSCPVTKQQLSVSDSSDLTPNHTLRRLIQSWCTMNASHGIQRIPTPKPPITKTQVAKIIRDASQSSHSPVKCLQTLKSIASESDANKRSIEAAGAVEFLASIVLRNTDFSYTPEEDGDVFELKTSGGDEALSILHSLHLSEAGLKTLLTLENRSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISQQASKATLRTLIQICPWGRNRLRAVEAGGVSVLIELLLDCKDRKPCEMMLVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATPIVLQEMLQVGVVAKLCLVLQVESGRKAQDKAREILRMHSRAWRNSPCVPSNLLSSYPN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3039 419 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Prci1g3039 419 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Prci1g3039 419 CDD RING-Ubox_PUB 8 60 IPR045210 -
Prci1g3039 419 Gene3D - 96 406 IPR011989 -
Prci1g3039 419 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Prci1g3039 419 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Prci1g3039 419 SUPERFAMILY RING/U-box 4 84 - -
Prci1g3039 419 SUPERFAMILY ARM repeat 118 406 IPR016024 -
Prci1g3039 419 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Prci1g3039 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3039 Prci-Chr1 48986472 48988092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3039 1 418 U-box Gene Family AT2G35930 58.057 1.64e-178 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3039 - - gmx:100809839 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3039 1 48986472 48988092 Prci1g3039 1 48986472 48988092 ECH