Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3038 ATGGATCAAGTTGAGATTCCTGAGTACTTCATATGCCCCATATCGCTCCAAATCATGAAAGATCCCGTCACTGCCGTCACCGGCATCACTTACGATCGAGAGAGCATCGAGCGCTGGCTCTTCACCGCCAACAACACCACCTGCCCCGTCACCAAACAGTCTCTGCCGATTGACTCCGACTTGACCCCCAACCACACCCTTCGCCGTCTCATCCAGGCTTGGTGCGCTCAGAATGCCTCCCTCGGCGTCGATCGTATTCCCACTCCCAAACCTCCCCTCGACAAGTTTCAGGTCCTCAAAATCCTCTCCCACGTTCGCAGCCCTCACTTGTCTCTCAAAGCCCTCAGGCAGTTAGAACTTCTCGCTGCCGAGAACGAGAGGAACAAGAAGTCTTTGGTGGAGGCCGGTGTTCCCAAGGTCATGGTCCTGTTCGTTTTGGATTGTTTCCAGAAACGACGGCTTCGCGAGGGGCTCGAGGAGGCTCTCAGTTTATTGCAGTTTGTTAAGGTTCCTGCGGAGGAAATCATGCTTCTCCTGCAGCAGAATGACCAGGTTTTGGATTCTCTCACGTGGGTTTTAGGCTGTGAAATAATGGAGAACTCCGTGATTCTCAAGTCCCACGCGATCGCAGTGCTCAAAACGATCGTGCAGAAGGCCGGTTCCGGCATTATGGAGAGGCTGAAACCCGAGTTCTTTGCAACAGTAGTGAAAGTCCTGCGAAACGGAATAACCCTGCAAGGGATGAACGCTGGCCTGAAAGTGCTGTTAGCAGCTTGTCCGTGGGGAAGGAATCGCGAGTTGATGGTGGAGGCCGGTGCAGTGCACGAGTTGATTGAGATTGAATTAGGGACGCCGGAGAAGAGAACAACGGAGCTGGTATTAGGAATACAGTTTCATCTGTGTTCTTGTGCAAATGGGAGGGCCCAGTTCGTGAGTCACAGAGGCGGCATTGCTGTGTTGACGGAGAGAATATTGAAAGTATCGCCGGCGGCGGATGAACGAGCCATATTTGTTCTGTCACTGGTATCAAAGTCGTCTGCATCGCACATGGTGATCCAGGAGATGGTCCAACTAGGGACTTTGTCGAAGCTTTGCATGTTCCTTCAGGCCGATCATCCGTCGTATCTAAAAGACAAAGCAATGGAGATACTCAAGTCCCATTCTGAGGTTTGGAAGAACTCTCCTTGCTTTCCTGGATCTTTTAATGCGAGTTTGCACAGATGA 1224 0.5172 MDQVEIPEYFICPISLQIMKDPVTAVTGITYDRESIERWLFTANNTTCPVTKQSLPIDSDLTPNHTLRRLIQAWCAQNASLGVDRIPTPKPPLDKFQVLKILSHVRSPHLSLKALRQLELLAAENERNKKSLVEAGVPKVMVLFVLDCFQKRRLREGLEEALSLLQFVKVPAEEIMLLLQQNDQVLDSLTWVLGCEIMENSVILKSHAIAVLKTIVQKAGSGIMERLKPEFFATVVKVLRNGITLQGMNAGLKVLLAACPWGRNRELMVEAGAVHELIEIELGTPEKRTTELVLGIQFHLCSCANGRAQFVSHRGGIAVLTERILKVSPAADERAIFVLSLVSKSSASHMVIQEMVQLGTLSKLCMFLQADHPSYLKDKAMEILKSHSEVWKNSPCFPGSFNASLHR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3038 407 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Prci1g3038 407 Coils Coil 115 135 - -
Prci1g3038 407 Gene3D - 96 395 IPR011989 -
Prci1g3038 407 SUPERFAMILY RING/U-box 3 82 - -
Prci1g3038 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Prci1g3038 407 SUPERFAMILY ARM repeat 98 374 IPR016024 -
Prci1g3038 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Prci1g3038 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
Prci1g3038 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
Prci1g3038 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Prci1g3038 407 FunFam RING-type E3 ubiquitin transferase 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3038 Prci-Chr1 48954031 48955619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3038 2 397 U-box Gene Family AT3G11840 43.864 9.30e-121 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3038 - - gmx:100798446 536.184