Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3034 ATGGCGACGTACTTCCATGGTAATTCAGAAATCCAAGCACCCGACGGCCTTCAAACTCTTGTGCTCATGAATCCGGGCTACATCCAGTACTCTGACACGCCTCCGCCACAACCATCGCATCCCGGCAACCTTGTCTTCCTCAATTCTGCCAACAACTCGCTCCCTCCTCAAACCCTACAGCACGCGCCGCCCTCTCATACCCAACAATTCGTGGGGATCCCTCTCCCTGCCGCCTCCTCTCACGACCCCACGCACCACTCCATGCATCCCCATCACGATGTCTCTGCTTTGCATGGATTCGTGCCCCGCATGCAGTACAATCTCTGGAGCGCAGTTAACTCGAACGCGGCGGCGAGTGATACCCCACGCTCTCAACAGGGCCTGTCCCTCAGCCTGTCCTCTCAGCAAGCGGGGATGGGGTCTTTCCGGGTTGAGCGTGACGTACCATCACAGGGTCAGGCGCCAGCTATGTCAGGGGATGATGTGCGTGCGTCAGGTGGTTCATCATCTTCGGCATCTGGCGTGACTAACGGCGTTTCAGGGATTCAGAGCGTGCTTCTGGGCTCCAAGTACTTGAAGGCAGCTCAGGAACTGCTAGACGAGGTCGTGAACGTGAACGATGGGATAAAGGGCGAAATGGCGAAGAGAAGTGGCAGCCAGACAAAGGTGATTAAAGAGTCCTCCACGGCTGCAAGTGGAGATTGTTCAGCTGGCGGAGAGGGAAGCGCGAAGCCTAGCTCTGAGCTCTCAACTGCGGAGAGACAAGATATTCAGATGAAGAAGGCGAAGTTAATCAGCATGCTTGACGACGTGGAGCAGCGTTACAGACAGTATCACCATCAGATGCAGATTGTGAGTTCTTCATTTGAACAAGCTGCAGGAATTGGGTCGGCGAGAACATATACAGCACTAGCACTGCAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAATGGGCCAAATTCGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGTTTTGGTGCAAAAATGGAAGGTTCGAGACTTAAATACGTGGATCATCACCTACGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAAATCCGTTTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCGAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTAGAAGAAATGTACTTAGAGGAGATGAAGGACCAAGAACAGAATGGAGGGGAGGAGAAATCAACCAAGAGCAGTGAAGATCCCCCCATGAAAACTGCAGCAGCCCCACAAGAGAAAGCTCCTGCCTCTGCCACTGAACCCAAAAGTTTTAATTTCAAACAAGACGTTGCCACTAACCCCAACACTCCATCAGTTTCAGTATCCACGCCGTCAACATCGCCAGTTGGGGCAAATGCCAGAAACCACTTCAGCTTCATGGGGACTTCAGAGCTAGATGGGATCACACAACCGAGTCCCAAGAAACCGAGGAACCATGGGATTCTGCAGTCCCCCATCAACATTGACATGAAGCCTGATGAAGGAGGGAATGGGCAAATCTCACTGAAATTCGGGGATGAAAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAACCAGACGAACTTCATTGGGGGATTCGGGCAATACCCAATTGCAGAAATTGATAGGTTTGAGGCAGAGCAATTCACACCAAGGTTCTCAGGTAATAATGGGGTTTCCCTTACTCTTGGTCTTCCTCACTGTGACTCACTATCAGCTGCAACCCATCAAACATTCCTTCCAAACCAGAGCATTCAACTTGGGAGAAGGATGGAGCTGGGTGAACCAAACGAGTTTGGTGGCATAAGCACTTCAACTCCTCTCTCTTCAGCTGCATTTGAGAGCATCAATATGCAGAACCCCAAGAAGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCTTGA 2058 0.5126 MATYFHGNSEIQAPDGLQTLVLMNPGYIQYSDTPPPQPSHPGNLVFLNSANNSLPPQTLQHAPPSHTQQFVGIPLPAASSHDPTHHSMHPHHDVSALHGFVPRMQYNLWSAVNSNAAASDTPRSQQGLSLSLSSQQAGMGSFRVERDVPSQGQAPAMSGDDVRASGGSSSSASGVTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNDGIKGEMAKRSGSQTKVIKESSTAASGDCSAGGEGSAKPSSELSTAERQDIQMKKAKLISMLDDVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQIRAANKSLGEEDCFGAKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPEKSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDQEQNGGEEKSTKSSEDPPMKTAAAPQEKAPASATEPKSFNFKQDVATNPNTPSVSVSTPSTSPVGANARNHFSFMGTSELDGITQPSPKKPRNHGILQSPINIDMKPDEGGNGQISLKFGDERQSRDGYSFMGNQTNFIGGFGQYPIAEIDRFEAEQFTPRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGISTSTPLSSAAFESINMQNPKKFAAQLLPDFVA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3034 685 Coils Coil 254 274 - -
Prci1g3034 685 CDD homeodomain 370 431 IPR001356 GO:0003677
Prci1g3034 685 MobiDBLite consensus disorder prediction 220 235 - -
Prci1g3034 685 Pfam Associated with HOX 185 321 IPR006563 -
Prci1g3034 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 455 - -
Prci1g3034 685 MobiDBLite consensus disorder prediction 440 506 - -
Prci1g3034 685 MobiDBLite consensus disorder prediction 478 506 - -
Prci1g3034 685 MobiDBLite consensus disorder prediction 440 457 - -
Prci1g3034 685 MobiDBLite consensus disorder prediction 118 140 - -
Prci1g3034 685 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Prci1g3034 685 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Prci1g3034 685 MobiDBLite consensus disorder prediction 118 175 - -
Prci1g3034 685 FunFam BEL1-like homeodomain protein 9 373 435 - -
Prci1g3034 685 MobiDBLite consensus disorder prediction 214 254 - -
Prci1g3034 685 SMART prehox3 180 322 IPR006563 -
Prci1g3034 685 SMART HOX_1 370 434 IPR001356 GO:0003677
Prci1g3034 685 Gene3D - 373 452 - -
Prci1g3034 685 SUPERFAMILY Homeodomain-like 371 437 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3034 Prci-Chr1 48943756 48947961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3034 1 685 Homeobox Transcription Factor Family AT2G35940 48.803 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci1g3034 POX 5.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3034 - - qsa:O6P43_006028 979.163