Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2997 ATGGAAGCAATCCAAAACATCAACTCGTGCACGCGCGCTTTCAACCCAGAGGAGGAGGAGGAGGAGCAAAAGGAAGCGATGTTCGAGAAGGCGTTAACGCCGAGCGACGTGGGGAAGCTGAACCGTCTGGTGATCCCGAAGCAGCACGCAGAGAAGTACTTCCCTCTGAGCGGTGGGGCTGGGGACGCCAAGGGCGTCTTGCTGAGTTTCGAGGACGAGGCCGGCAAGTGCTGGCGCTTCCGTTACTCCTATTGGAACAGTAGCCAGAGTTACGTCCTGACCAAAGGCTGGAGCCGATACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCACCGTCACCTCACAGATTCTCACCGCCTCTTCATAACCTGGAGACGCCGCCACCCTCTTGCCAGTCCACCAGTTACCAGACCTATGCATATGGCCGTCGCAGGCGATGCCACTTGCAGAGGTGGGGGTGTGGGTGTAGGCTGGACCACACCTACACCTTTCTATTCTGCGCAGCCTCGTCCCGAGCATCAGCCTTTGCCATACCAACCTCAAACTCTTCATGCACTAGGAAGAGGTTCCCCGGCTCAAAGGGCGGCGGCGGCGGGAAACAGCTCTAGTAAGGTACTTAGACTGTTTGGAGTAAACATGGAATGCCAAGCAGAACCAGACGAATCGGGACCTTCCACATCCCATAATCACTCCTCCAACGTCTCATCATCATCATCCACCCATCACCACTTCTACCAATATGATTATCCTCAGCCTTCTTATGCTTCTAGTCCTCAACCCCACATGGTACGTCAACAATCATATTTCTAA 822 0.5499 MEAIQNINSCTRAFNPEEEEEEQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYFPLSGGAGDAKGVLLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDSHRLFITWRRRHPLASPPVTRPMHMAVAGDATCRGGGVGVGWTTPTPFYSAQPRPEHQPLPYQPQTLHALGRGSPAQRAAAAGNSSSKVLRLFGVNMECQAEPDESGPSTSHNHSSNVSSSSSTHHHFYQYDYPQPSYASSPQPHMVRQQSYF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2997 273 CDD B3_DNA 27 122 IPR003340 GO:0003677
Prci1g2997 273 MobiDBLite consensus disorder prediction 223 273 - -
Prci1g2997 273 MobiDBLite consensus disorder prediction 220 273 - -
Prci1g2997 273 MobiDBLite consensus disorder prediction 168 203 - -
Prci1g2997 273 SMART B3_2 28 132 IPR003340 GO:0003677
Prci1g2997 273 Pfam B3 DNA binding domain 28 131 IPR003340 GO:0003677
Prci1g2997 273 ProSiteProfiles B3 DNA-binding domain profile. 28 132 IPR003340 GO:0003677
Prci1g2997 273 Gene3D - 17 136 IPR015300 -
Prci1g2997 273 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 234 IPR044800 GO:0003700
Prci1g2997 273 FunFam B3 domain-containing protein 21 140 - -
Prci1g2997 273 SUPERFAMILY DNA-binding pseudobarrel domain 24 132 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2997 Prci-Chr1 48635544 48637417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2997 21 231 RAV Transcription Factor Family AT5G06250 50.455 1.30e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci1g2997 B3 8.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2997 K09287 - gmx:100818164 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2997 1 48635544 48637417 Prci3g2832 3 40242285 40244363 CCT
Prci1g2997 1 48635544 48637417 Prci1g2997 1 48635544 48637417 ECH