Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2993 ATGGGCGCAATGATGGCAAGGATTAGTTGCCCGCACCTCGCTGGGCTTGCAGGTGTCAACGAAGCCCGAGTAAAAATTTATTCTTGGATCGCTTCTGAATCCTCTTTTCCACTTTCCCGTTTCCAGTCTCCACACCCTGCCTACGAGCAGTCGAGCACTGCCGTTTCCTTGCGACTTGCGATGGCAGCAATCACAAGATTCCTTGGCACCAGTTCTGCTTTGCGTCGATTGTCACTTGTTTCTCCTGCTCTCCTCAGTTTTCGCAGAGGAATTGCTTACAAACTGTTTGTTGGAGGTTTGCTCTTTCTCTCCTCTCTGTATCTCGCCTCCTCCATTCTCTTCGGACTGTCGTTTCTCACAACAGAGAAGGGATTGTCAGAAGCATTTTCTGACTTCGGGCAAGTTGTTGAAGCAAAAATTGTGATGGACAGGGTATCAGACAGATCGAAAGGGTTTGGGTTTGTCACCTTTGCCTCAGAGGATGAGGCTGAGAATGCCATAACAGGGATGAACGGGAAGGCACTAAACGGTCGTGTTATCTTTGTGGATTATGCAAAACCCAAACGCAATATTGGTGATGGAATGCCAATTGCCAGGGGACCTCCTGAACCAACAGCACACAGTTAA 627 0.4848 MGAMMARISCPHLAGLAGVNEARVKIYSWIASESSFPLSRFQSPHPAYEQSSTAVSLRLAMAAITRFLGTSSALRRLSLVSPALLSFRRGIAYKLFVGGLLFLSSLYLASSILFGLSFLTTEKGLSEAFSDFGQVVEAKIVMDRVSDRSKGFGFVTFASEDEAENAITGMNGKALNGRVIFVDYAKPKRNIGDGMPIARGPPEPTAHS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2993 208 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 108 194 - -
Prci1g2993 208 SUPERFAMILY RNA-binding domain, RBD 114 200 IPR035979 GO:0003676
Prci1g2993 208 SMART rrm1_1 111 183 IPR000504 GO:0003723
Prci1g2993 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 187 IPR000504 GO:0003723
Prci1g2993 208 Gene3D - 89 191 IPR012677 -
Prci1g2993 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2993 Prci-Chr1 48593683 48596481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2993 116 189 Eukaryotic Initiation Factors Gene Family AT2G23350 36.486 1.62e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2993 - - pcin:129307886 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2993 1 48593683 48596481 Prci1g2993 1 48593683 48596481 ECH