Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2988 ATGCCTCCCCTGCTGCGTAAACCGCAAGTGAATCCTTCGATTTCGCGTTGGCGTCAAGCTCGCCGGAGGCTTCTTCGTCTCTGCAAAATGTGGGCGAGCGCAGAAGGTGGTGCTCCGGAGGTCATTCTGGAGACTTCCATGGGTTCTTTCACCGTTGAGCTGTACTACAAGCATGCACCCAGAACCTGCAGAAACTTCATTGAACTCTCTCGCAGAGGCTATTACGATAACGTTAAATTCCATAGAATCATCAAGGACTTCATAGTACAAGGTGGAGATCCCACTGGAACAGGAAGGGGAGGGGAGTCCATTTATGGTCCAAAATTTGAAGATGAGATAAGGCAGGAGTTGAAGCACACCGGAGCTGGTATCTTATCCATGGCAAACGCTGGCCCAAATACTAATGGTAGTCAGTTCTTCATTACTTTGGCGCCATGCCCATCTTTGGATGGTAAACACACCATATTTGGAAGAGTATGTCAGGGGATGGAAATTATCAAGAGACTTGGCAGTGTCCAAACTGATAGCAATGATAGGCCTATCCATGATGTGAAGATACTAAGGACATCGGTAAGGATTGACACAAATTCCCTTCCCTGA 600 0.475 MPPLLRKPQVNPSISRWRQARRRLLRLCKMWASAEGGAPEVILETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGPKFEDEIRQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCQGMEIIKRLGSVQTDSNDRPIHDVKILRTSVRIDTNSLP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2988 199 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 75 92 IPR020892 GO:0003755|GO:0006457
Prci1g2988 199 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 41 190 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 151 166 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 80 92 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 69 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 138 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 Gene3D - 26 197 IPR029000 -
Prci1g2988 199 FunFam Peptidyl-prolyl cis-trans isomerase 31 193 - -
Prci1g2988 199 SUPERFAMILY Cyclophilin-like 40 192 IPR029000 -
Prci1g2988 199 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 44 191 IPR002130 GO:0000413|GO:0003755
Prci1g2988 199 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 38 191 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2988 Prci-Chr1 48572234 48576134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2988 41 194 U-box Gene Family AT5G67530 48.701 3.97e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2988 K12733 - gmx:100786302 320.857