Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2972 ATGTCCTTGGTTCTTAAAAAACCTCCATCGTTAAAAGCGTCCCCATCCCATTCTTCAACTCATCACCTAAAACTGAGACCCATATCCCTCTCTTTCCCCGTTCAACGATTCCCTAGACACCCCCAATTTCGAGTTCCCCTTACAATCCTTAACGCCGCTATCCACCCTTCCATTATTCCTCCAAAGGCCAAAGCTTCCAATACTCTCTCGCTTTCTCAGACTCTTCGCTTCCTCAAACCCTGTCTTGTCTCCGAGCAAAAAATCGTTTTCTTGGGCTGGCTCTGTAGCGTCATATCTGTTTACTCCCTATCCAAAATCATCTCTTTAGTCGGGAAAGTTTCTGCTACTATCAGCGACATTGACGTTATCAAGTTGCGAGACAAAGGTTTAGTATTGGGGGGTTTGGTGATTGTCCGGTTGATTGCAAGTTATGGGCAGCAAGCCTTTTTATGGAAAGCTGCACTAAATGCGGTATATAAGCTTAGGGTTCACGCTTTCGACAGGGTTTTGCAGAGAGAATTGGGATATTTTGAAGGCAAGGATGGCGTTTCCGCCGGGGACATTGCGTATCGGATCACTGCGGAAGCTTCGGACATTGCTGATACTTTATATGCTCTGCTCAACACCATAATTCCCAGCACTCTTCAGTTATCAGCTATGATGACGCGAATGCTGGTGATCAGTCCTGTCCTTTCTTTGATTTCAGCTTTGGTTATTCCTTGTATGGCACTTGTTGTTGCCTTTCTTGGTCAGAAACTACGTTCAGTATCTAGAAAAGCACATCTTAGCATTGCCACTCTCTCGGCATATCTAAATGAGGTCCTTCCTGCAATTCTTTTTGTGAAAGCAAACAATGCAGAGCTGTCTGAGAGTGGCCGGTTTAAGAGGCTGGCTAGGATTGACTTTTTTGAATGCCTGAACAAGAAGAGGATGAAAGCAGTTATTCCTCAGATTATACAGGCTATTTATTTCGGCGTGCTATTTATACTTTGTGCTGTTTCAATTGTGATTTCAAGAGGATCATTCAGCAGCTGTAACTTAGTTTCGTTTGTGACATCATTGCTCTTTTTGATTGAACCAATCCAGGATGTGGGAAAAGCGTACAATGAATTGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGATCTGATCAAGTTCACAGATAAGGTAGTTGAGAAACCAGATGCTGTGGATTTAGACTCTGTTAGAGGGGAGATAAACTTTTGTAACGTCTCATTCAAGTATGGTGAAGAAATGTCGCTGGTTCTAAATGGACTGAATCTTCACATTGAAGCTGGAGAGATAGTTGCTCTTGTTGGTCCCTCTGGTGGAGGGAAAACAACACTCATAAAACTGTTGCTTCGTCTTTATGATCCCCTGGCTGGCTGCATACTTATTGATAATCATAACATCCAAAGCATTCGGTTGCAAAGTTTGAGAAGACATGTTAGTCTTGTTTCTCAAGATATAACACTTTTTTCGGGAACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAGAAATTGACATGGAGAGGGTAAAACATGCAGCACAAATTGCTAATGCTGATGAATTTGTAAGAGAACTTCCAGAAGGATATGAAACCAATATTGGACCGAGGGGCTCAACTCTAAGTGGAGGACAAAGGCAAAGGCTAGCCATTGCCAGGGCACTATATCAGAATTCTTCTATCTTGATACTGGATGAGGCAACGTCTGCTTTAGATAGCAAATCTGAGTTATTGGTGAGGCAAGCTGTAAAGCGTTTGATGAAAAATCACACTGTGCTGATAATTGCCCATCGCATGGAAACGGTTCGGATGGCTAAAAGAGTATTCCTCTTGGATAGGGGGAAGCTAGAAGAGTTGCCTCATTCTGCTATATGGGTTGGTCGCAAGGACTCGTTGTTATCATCTGGTTTGGTGATTTAA 1938 0.4288 MSLVLKKPPSLKASPSHSSTHHLKLRPISLSFPVQRFPRHPQFRVPLTILNAAIHPSIIPPKAKASNTLSLSQTLRFLKPCLVSEQKIVFLGWLCSVISVYSLSKIISLVGKVSATISDIDVIKLRDKGLVLGGLVIVRLIASYGQQAFLWKAALNAVYKLRVHAFDRVLQRELGYFEGKDGVSAGDIAYRITAEASDIADTLYALLNTIIPSTLQLSAMMTRMLVISPVLSLISALVIPCMALVVAFLGQKLRSVSRKAHLSIATLSAYLNEVLPAILFVKANNAELSESGRFKRLARIDFFECLNKKRMKAVIPQIIQAIYFGVLFILCAVSIVISRGSFSSCNLVSFVTSLLFLIEPIQDVGKAYNELRQGEPAIERLFDLIKFTDKVVEKPDAVDLDSVRGEINFCNVSFKYGEEMSLVLNGLNLHIEAGEIVALVGPSGGGKTTLIKLLLRLYDPLAGCILIDNHNIQSIRLQSLRRHVSLVSQDITLFSGTVAENIGYRDLTTEIDMERVKHAAQIANADEFVRELPEGYETNIGPRGSTLSGGQRQRLAIARALYQNSSILILDEATSALDSKSELLVRQAVKRLMKNHTVLIIAHRMETVRMAKRVFLLDRGKLEELPHSAIWVGRKDSLLSSGLVI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2972 645 Pfam ABC transporter transmembrane region 103 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g2972 645 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g2972 645 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 373 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g2972 645 SUPERFAMILY ABC transporter transmembrane region 76 388 IPR036640 GO:0005524|GO:0016020
Prci1g2972 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 644 IPR003439 GO:0005524
Prci1g2972 645 FunFam ABC transporter ATP-binding protein 400 641 - -
Prci1g2972 645 FunFam ABC transporter related 76 387 - -
Prci1g2972 645 Gene3D ABC transporter type 1, transmembrane domain 60 386 IPR036640 GO:0005524|GO:0016020
Prci1g2972 645 Gene3D - 397 640 IPR027417 -
Prci1g2972 645 CDD ABC_6TM_exporters 129 381 - -
Prci1g2972 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 625 IPR027417 -
Prci1g2972 645 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 81 628 IPR039421 -
Prci1g2972 645 SMART AAA_5 433 621 IPR003593 GO:0016887
Prci1g2972 645 Pfam ABC transporter 424 575 IPR003439 GO:0005524
Prci1g2972 645 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2972 Prci-Chr1 48374961 48379332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2972 149 642 Calmodulin-binding Proteins AT2G36910 30.214 1.99e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2972 K02021 - vvi:100264781 797.734