Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2928 ATGCGTTCCGGTACTCCCTCTAGTTCCGCAGGAGCCAGCAGCGGTGCAGAGACGGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCTGAAATTCGAGAGCCCAGGAAGCCCAATAGGATATGGTTAGGGACATTTCCTACCCCTGAAATGGCCGCCATTGCCTATGACGTGGCTGCCCTTGCCCTCAAAGGCAAGGACGCCGACCTGAACTTCCCTGACTCCGCGTCTTCGCTGCCCGTTCCTGCCTCTCCCGCTGCCCGTGACATTCAGATTGCTGCAGCCAGTGCTGCTGCCGCTGCTGGCGCAGCCAAGGATGCCTTGTCCTTGCCTCATGAACAAGGCAGCGCTAGTGTGAGCCTCTCGGAGGGACAACAACATGGCGGTGCTGAGTTTGTGGACGAGGATTTGATCTTTGATTTACCCAATGTTCTTGTCAACATGGCTGAAGGAATGCTGCTCACCCCTCCTCCTTTGGACTTTACTGGGAACAACGATGCTGATTTTGCTGCCGGAGGCAACGTCGGTGATGATGATCAAAACCTTTGGAAATTTCCATAA 582 0.5636 MRSGTPSSSAGASSGAETGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGKDADLNFPDSASSLPVPASPAARDIQIAAASAAAAAGAAKDALSLPHEQGSASVSLSEGQQHGGAEFVDEDLIFDLPNVLVNMAEGMLLTPPPLDFTGNNDADFAAGGNVGDDDQNLWKFP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2928 193 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 MobiDBLite consensus disorder prediction 1 15 - -
Prci1g2928 193 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Prci1g2928 193 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 MobiDBLite consensus disorder prediction 1 38 - -
Prci1g2928 193 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Prci1g2928 193 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Prci1g2928 193 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Prci1g2928 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 191 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2928 Prci-Chr1 47968120 47969002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2928 19 193 AP2-EREBP Transcription Factor Family AT2G36450 57.222 8.02e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2928 AP2 6.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2928 - - gmx:100799620 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2928 1 47968120 47969002 Prci3g2907 3 40743174 40744636 CCT
Prci1g2928 1 47968120 47969002 Prci1g2928 1 47968120 47969002 ECH