Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2922 ATGGACATGGACAGCTCGCGGAGACCGTTCGATAGATCAAGAGAGCCGGGTATCAAGAAAGCCCGACTGACCGACGAGCTCGAGCGTGGCTCAAGTTCCAGTCTTCGACCGTTTCCTCAGCGACAAGTGGCTTCTGGAGTTAATTTATTGGCCCCAGCAAGGTTTAGGACAAATGACAGAGATTCCGAAAACAGTGACTCTGGTCGCGGCGGATACCAGCCCCCTGCTCACCAAGAGCTTGTCAATCAGTACAAAACCGCACTTGCTGAGCTAACATTCAATTCTAAACCGATAATTACCAACTTGACTATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCACTGTTTGCGCTAACATTCTAGAGGTTCCCACTGAACAAAAGCTCCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATACAGGCAGGTTGATTCTTCTGTCCACTCAAGTATGAGGCACCTTTTCGGAACTTGGAAAGGAGTCTTTCCACCCCAGACCCTCCAGATGATTGAGAAGGAACTCAGCTTCACTCCTGCTGTCAATGGTTCATCTTCTGCATCTACACTGAGGAGTGATTCACAGTCACAACGACCACAGCATAGCATCCATGTGAATCCTAAATATCTGGAGAGGCAACGTCTTCAGCAGTCAGCCAGGATTAAAGGAACAGCTAATGATATTGCTGGAGCTACTACAAACTCTAGTGATGGTGCAGAAAGGCCAGATAGAGCATTGGGTGCTGCACGGCCATGGATGGATTCCAGCGCTAACATGCATAACATTCAGGGCTCTAATAGAGATTCGTATAATGATTCTGTTCCTGAAAAGGGCATTGGTACATCCTACGGAGGCAATGAATATGGTCCTGATCTTTCAAGGAGTTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTAGCACGTGACAAAACTTGGTACAAAGCAGGCAGCAATGCTGCAGACATGATGTCTGTCCAAAGGAATGGTTTCGGTCTCAAGCGTAGGTTATCAAATCATGAAGCACCAAAGTCCATCATTTTGGATGAACATAATCAGCCAACCCAAAGCTTAACTAGCATAAAGAGTAGTGTCTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGACTGAGCATGGTGCATCCAATGCCTCTAGCAACTTGAGCAAAGATTGTTGGACTGCTGATGATAACAATTTGGCAGTTGAAGATCACCTTCAAAGCATGTTTCAGGAAGATAGAGAAGTATCCACTGAAACAAAACGCCTGCCTGGTTTTGGTCATCGGCCATCATTATCTTGGAAATCTCAGCAGCAGTCATTTGATGAGCCGAATCATAGGCCATGTCCTTCGGAAGGCATTGGATCCACTCTTGGTAGGTTGCCAAACATTGTGAATCCTTCTGATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAGTGCCACATTAGGATCAGTAGGAACAGCACAGCAACAGCAATTTCATTCTGTGGGAGCAGAGTCTCCTTCTAGGCAGTCACCTTTGCGACAACATTCTCCATCACCTCCGGTTAATGTCCACCGTCCTCATCAAATGCAGATTTTGGCTGAGCAAGACCATCCACAGACTCTTAAAATGGCTCAATTTTCAGGACGTCTACAGGGCCAAGATATTCAAGATTCATCATCCATCCTCCCACGTACTGTTCAGCTGCAGAATCTTGGTTCTAATACTGAAGTTTCTGAGATGAAGGAAACCACAGCCCTCTCTAAAGAAACTAAAGAAGCTTCAGAGCAGTCAACTACAAGTACTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTCAGCAGTGGTCAGCCCGGTACAAGTTTCATGGATAGAAGGAGCCTGACATCGAAATCAGGGGTTCAGCCTACGCAGCCAAGTGGATCATCTCCTACAACGTCCGTTTCTTCAGGGTCTGGGGTTGCATCTCCATCTCAATTAGGTCCTTCTAATGATGACTTATCTACTCTGCCAAAAGAATCTCAAGGAAAGGTTGGAGCTCTGTCAAGCCTGCCTGCTCTACCCCCATCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACTTCAAATGCCACCAATAATAAATCTAATCCAGTTTCAAGCCTTTTAAACTCGTTAGTTGCAAAGGGTTTGATTTCTGCAAAAATAGATTCGTCTACTGAGGTGCCTGCTGAGGTGCTGATTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGCAGTACTCTGCCGGCTGTTTCAGTTACTGGTTCTGCAACTGTTCCTGATTTATCTACCAGAGACAATCAACCTGCAAAAAGTTCTGCACAATCAACCCCTGCAGAAATTAAAAATCTAATTGGCTTTGTTAAGCCCAGTGTAATCCGGGAATTGCATTTACCTGTGATCAGAGAACTATTGGATGATTTCCCCCATCATTGCAGCAGTTGTGGCCTTAGGCTTAAGCATCAGGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAAAGAGAACAAAATGATATGTTGAAGGCCTCAAGGAGATGGTATTTGAGGTCAAGTGACTGGATTGTCGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACACGGCAATAAATCAGACAGAAGTGAAGTGGATGCTGAAGTTCCCTCTGATGAAGATCAGTGCTTATGTATGTTGTGTGGTGAGCTGTTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTTCCTGTCTCCGGTGGTGGTAGTGAGATGTATGTTGATGTCTGTACTAAAAGGGGTCCTATTGTTCACACTTGGTGCTTATCAGGAGCTCCATATCTAGAGCACCTACAAAGGAACAGGATTAGAGCTTTAATTTAG 3033 0.45 MDMDSSRRPFDRSREPGIKKARLTDELERGSSSSLRPFPQRQVASGVNLLAPARFRTNDRDSENSDSGRGGYQPQXAHQELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSVHSSMRHLFGTWKGVFPPQTLQMIEKELSFTPAVNGSSSASTLRSDSQSQRPQHSIHVNPKYLERQRLQQSARIKGTANDIAGATTNSSDGAERPDRALGAARPWMDSSANMHNIQGSNRDSYNDSVPEKGIGTSYGGNEYGPDLSRSSGLGIGRAGGRTSELARDKTWYKAGSNAADMMSVQRNGFGLKRRLSNHEAPKSIILDEHNQPTQSLTSIKSSVLSSSWKNSEEEEYMWDEVNAGLTEHGASNASSNLSKDCWTADDNNLAVEDHLQSMFQEDREVSTETKRLPGFGHRPSLSWKSQQQSFDEPNHRPCPSEGIGSTLGRLPNIVNPSDVKMGNRPFLSSATLGSVGTAQQQQFHSVGAESPSRQSPLRQHSPSPPVNVHRPHQMQILAEQDHPQTLKMAQFSGRLQGQDIQDSSSILPRTVQLQNLGSNTEVSEMKETTALSKETKEASEQSTTSTMLAAVMKSGIFSSGQPGTSFMDRRSLTSKSGVQPTQPSGSSPTTSVSSGSGVASPSQLGPSNDDLSTLPKESQGKVGALSSLPALPPSSSTVSSASAKTSNATNNKSNPVSSLLNSLVAKGLISAKIDSSTEVPAEVLIRLEDQSQSITTSSTLPAVSVTGSATVPDLSTRDNQPAKSSAQSTPAEIKNLIGFEXKPSVIRELHLPVIRELLDDFPHHCSSCGLRLKHQEQFNRHLEWHAMREREQNDMLKASRRWYLRSSDWIVGKDEVSSEYEGIDSIDLHGNKSDRSEVDAEVPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSGGGSEMYVDVCTKRGPIVHTWCLSGAPYLEHLQRNRIRALI 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2922 1012 Gene3D - 72 202 IPR008942 -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 645 706 - -
Prci1g2922 1012 ProSitePatterns Zinc finger C2H2 type domain signature. 856 876 IPR013087 -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 471 485 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 237 265 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 1 29 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 1 39 - -
Prci1g2922 1012 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 282 326 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 454 570 - -
Prci1g2922 1012 Pfam CID domain 86 196 IPR006569 -
Prci1g2922 1012 CDD CID_Pcf11 82 194 IPR047415 -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 800 820 - -
Prci1g2922 1012 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 42 994 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Prci1g2922 1012 MobiDBLite consensus disorder prediction 54 77 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 720 747 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 208 229 - -
Prci1g2922 1012 SUPERFAMILY ENTH/VHS domain 78 207 IPR008942 -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 282 302 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 645 747 - -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 513 559 - -
Prci1g2922 1012 SMART 558neu5 80 202 IPR006569 -
Prci1g2922 1012 MobiDBLite consensus disorder prediction 208 269 - -
Prci1g2922 1012 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2922 Prci-Chr1 47885539 47893962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2922 80 416 C2H2 Transcription Factor Family AT4G04885 38.439 1.49e-56 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2922 K14400 - gmx:100807857 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2922 1 47885539 47893962 Prci1g2922 1 47885539 47893962 ECH