LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g2921	ATGAATCCAATAGACGAAGGTCTATCAAATTCTCCAACGAGATCAAAGGGTAAAGCTCCGGCTGACACGTCTTCTTCGGGTCATTTGGAGCAGGAAATATACGGGTTCTCTCCTATGGAATTGAGTTCTGGAGCATTCGGAAATGCCTTAGCTAGTCTCTCAATGGCGGACATTGGCCTTTCTGGCCATTCTTCTTCGTCTTTGTTTGATTCTCCTTTCATGGAGTTGAGAGCATTCTCAACCATGAGCCCAACTTCTCTGGCTTCTCCTCCTCTTCCTCCTGTTAGTGATGAGAGAGCTCCTTCGGTTCCAACAACTGTCAAGGAGGAGACCGGATTAATAGAAACAAGCGGTGAGTTGGAGGACGCTGATGTGCCACAGCCGCTTGAGTGTTTACAGGAGAATCCGATTCCGCCATTTCTTTGGAAAACCTACGATCTGGTGGATGATCCATCGCTGGATCCGATCATATCATGGGGCTCGACTGGTGCTAGTTTCGTGGTATGGGACCCTGTGGAATTTGCAAGGATCGTCTTGCCACGGAATTTCAAGCATAACAATTTCTCAAGTTTTATCCGCCAGCTAAATACTTATGGGTTCCGCAAGATTGACCCTGATAAATGGGAGTTTGCGAATGAAGGTTTCAAGCAAGGGAATAGACATCTATTGAAGAACATACAAAGGCGCAGGTCGCTGCAATCCCCACATGCTGGTAATCTTGGCCCATCTACTGAACCAGGAAAGTCTAGAGTTGAGGTCGAGATTGAAAAACTGAGAAAGGAGAGGAGTATATTAGTCCAAGATTTGGTTGATTTGCAGCAACAACAGAGAAGGACTGTTCAAGAGGCGGGACAAGTGAACCAGAAGCTTGAGTCTGCTGAACAGAGACAGAAACAAATGGTTTCTTTCTTGGCGAAGTTGTTTCAAAATCCAGCATTTGTAACCCGCCTGAGAAAACAGAAGGAACTGACAGGTATAGATTCTCCAAGAGTGAGAAGGAAGTTTGTCAAGCAGCACCAACACAAAACATCAGGCTCTTTGAATGAAGGGCAGATTGTAAACTGCCAACCTGATTGGAGAGACATTACCAATCTTTCTGAAACTCCGGTGCTGAATCCAATTTCTTTTGAACAGTCTCCTGACTACCCTTCACAGGGTTGGGCAAGAGAACTTAGTTCAGTAGCAGAAAATCCGGAAGTTCAAGCTAATGGTGTTGTATCATATGAACTGGCTGCAGCGAATGAGATGACAACTCCAAAGATCATGGGAGAAGGATCGTCAAGCTCAGGGCTTCAAGGTCCTCTTTTGAAAGGAGAAAACGTCATGAGACCTAATCAGGAAGTTATCCTAGAGGATCTGACGAGGGAGAAGGGCTTTTCAATGTTTTACCCGCCTGAAACTGAGAGTGTTACATGGAACCCGAGCTTTAATGTTAGCGGTGCTACTTCTAGCTCTGTGAATGTTCTGTGGGACGATCCAATTCCAATCAATTTGAAGTGCCAGAATTTGGAGTCACAGGTGGCATGTCAGACCTTTGGGATATAA	1545	0.4537	MNPIDEGLSNSPTRSKGKAPADTSSSGHLEQEIYGFSPMELSSGAFGNALASLSMADIGLSGHSSSSLFDSPFMELRAFSTMSPTSLASPPLPPVSDERAPSVPTTVKEETGLIETSGELEDADVPQPLECLQENPIPPFLWKTYDLVDDPSLDPIISWGSTGASFVVWDPVEFARIVLPRNFKHNNFSSFIRQLNTYGFRKIDPDKWEFANEGFKQGNRHLLKNIQRRRSLQSPHAGNLGPSTEPGKSRVEVEIEKLRKERSILVQDLVDLQQQQRRTVQEAGQVNQKLESAEQRQKQMVSFLAKLFQNPAFVTRLRKQKELTGIDSPRVRRKFVKQHQHKTSGSLNEGQIVNCQPDWRDITNLSETPVLNPISFEQSPDYPSQGWARELSSVAENPEVQANGVVSYELAAANEMTTPKIMGEGSSSSGLQGPLLKGENVMRPNQEVILEDLTREKGFSMFYPPETESVTWNPSFNVSGATSSSVNVLWDDPIPINLKCQNLESQVACQTFGI	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g2921	514	ProSitePatterns	HSF-type DNA-binding domain signature.	179	203	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	MobiDBLite	consensus disorder prediction	230	250	-	-
	Prci1g2921	514	Gene3D	-	132	230	IPR036388	-
	Prci1g2921	514	Pfam	HSF-type DNA-binding	140	229	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	SMART	hsfneu3	136	229	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	FunFam	Heat shock transcription factor 1	133	230	-	-
	Prci1g2921	514	MobiDBLite	consensus disorder prediction	1	28	-	-
	Prci1g2921	514	SUPERFAMILY	"Winged helix" DNA-binding domain	136	229	IPR036390	-
	Prci1g2921	514	Coils	Coil	248	275	-	-
	Prci1g2921	514	PRINTS	Heat shock factor (HSF) domain signature	140	163	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	PRINTS	Heat shock factor (HSF) domain signature	191	203	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	PRINTS	Heat shock factor (HSF) domain signature	178	190	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g2921	514	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	126	351	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g2921	Prci-Chr1	47863959	47867089	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g2921	82	358	HSF	AT5G03720	55.789	1.49e-93	289

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Prci1g2921		HSF_DNA-bind	1.6e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g2921	K09419		-	qsa:O6P43_005885	454.521