Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2895 ATGGATTGGGATTGGAGCACAAGACCTTCTGTTGTTCCTCAAGCCGACTCTTCCTTTGGCTTCCCCTTGAACTCTAACTGCAGTACTCCACATCCAGGAACGGAAGTGAAACATCTAGCAATGACAGAGAGACAAGGGTTGGTTCCGGGTATGGACAAGGTCAACTACGAAAAGCAAGAACAGAAGAAGAAGAGATTGACAAGCAAGCAGCTTGAGTCTCTGGAGAAGAGTTTCGAGAAGGAGAAAAAGTTGGACACAGAAAGGAAGATGAAGCTTTCGAGGGAGATCGGGCTGCAGCCTCGCCAGGTTGCGGTTTGGTTCCAAAATAGGAGGGCTAGGTGGAAGGCAAAGCAGCTTGAGCACTTATACGAAGCCCTCAAACAGGACTTTGATGCCATCTTCAAGGAAAAACAGGAGCTTCAAGAAGAGGTTATGAGGTTAAAAGCTATGCTGAGAAACCTAGAATCCAGGACGCAGGCATCTGCAGATCATCAAGAAATCTGGGGAAGAAAGTAG 516 0.4729 MDWDWSTRPSVVPQADSSFGFPLNSNCSTPHPGTEVKHLAMTERQGLVPGMDKVNYEKQEQKKKRLTSKQLESLEKSFEKEKKLDTERKMKLSREIGLQPRQVAVWFQNRRARWKAKQLEHLYEALKQDFDAIFKEKQELQEEVMRLKAMLRNLESRTQASADHQEIWGRK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2895 171 Pfam Homeobox associated leucine zipper 117 151 IPR003106 GO:0006355|GO:0043565
Prci1g2895 171 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Prci1g2895 171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 161 IPR045224 GO:0003700
Prci1g2895 171 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Prci1g2895 171 SMART HOX_1 59 121 IPR001356 GO:0003677
Prci1g2895 171 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Prci1g2895 171 Gene3D - 54 123 - -
Prci1g2895 171 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Prci1g2895 171 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Prci1g2895 171 CDD homeodomain 61 118 IPR001356 GO:0003677
Prci1g2895 171 Coils Coil 109 157 - -
Prci1g2895 171 Pfam Homeodomain 62 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2895 Prci-Chr1 47638801 47640350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2895 18 149 Homeobox Transcription Factor Family AT5G03790 51.880 6.22e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g2895 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2895 - - pcin:129303220 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2925 3 40899754 40901566 Prci1g2895 1 47638801 47640350 CCT
Prci1g2895 1 47638801 47640350 Prci1g2895 1 47638801 47640350 ECH