Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2882 ATGGCGGAATCGGTTTCGGATGATTCCTCCCACCATACTCCGCCGCCGGAGGCGGCACCTGTTCGCGATCGCAAAAAATGGGCTGATGAAGCGGAAGAAGAAGTTCCTGAAGAAACGAGTGAAGCCACTGCGAGTTCGTCGACAGTCTCGTCGCTTAAGGTTGATGAACTAACAATCGATGAGAAAAAGAAGAGTGCTAGGGTTTTGGATGAACCCGATGATTCCAGTATCCAAGCGGTTACATCGGGTGATACTCCCTATAATTCAGCGAGTACCTTTGAAGATTTAAATCTGTCCCCGGAGTTGCTGAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATTAGTTTGCCGATGATTTTGAACCATCCTTACAAGGATTTGATCGCTCAGGCACATAACGGATCTGGCAAGACAACTTGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTAAGGTGCAAGCTCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCCATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACAGGGATTGTTTCTGAATGTGCCATTCCCACAGACAGCAGAGATTCTATTCCAATATCAAAACGACCACCCATAATGGCGCAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAATGGACGTCATTTAAGAAGCTGGGTGTAAGCAGATTAAAAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCCTTGAGAATAATGAAGGAAATAGAAAAAGTCAATCTGCATTGTCAGGTTCTTCTTTTTTCAGCTACCTTTAATGACACAGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTGCAGGCAGTGAAGCAATACAAGGTGAACTGTCCAGATGAGCTCTCTAAGATTTATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTATATTTGTGCGCACAAGAAACAGTGCAAGTATGTTGCATAAATCACTTGCGGATTTGGGTTATGAGGTTACTTCAATACAAGGTGCTCTTGACAATAATGAGAGAGACAAGATTGTTAAGGAGTTCCGGGATGGTTTGACTCAAGTTCTTATATCTACTGATGTTCTTGCTCGAGGTTTTGATCAGCAACAGGTGAATTTGGTTATCAATTATGATCTCCCTGTGAAACATACTGCTGTTTATACCCATGAACCAGAGCCCGACTATGAGGTATATTTGCACAGGGTTGGTAGGGCAGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACTTGATATGTGGTGAAAGGGATGAGAATCTGATGGAAAAAATTGAGAAACATTTTAGCACTCGTGTAACTGAGGTTCAACTACGAAATGTTGATGATTATAAATGTGCTCTTAAGGAGGCTGGTTTACTGCAATAA 1503 0.4198 MAESVSDDSSHHTPPPEAAPVRDRKKWADEAEEEVPEETSEATASSSTVSSLKVDELTIDEKKKSARVLDEPDDSSIQAVTSGDTPYNSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNHPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLRKMGRYTGIVSECAIPTDSRDSIPISKRPPIMAQVVIGTPGTIKKWTSFKKLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIEKVNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVKKEELSLQAVKQYKVNCPDELSKIYVIRDYIFEIGENVGQTIIFVRTRNSASMLHKSLADLGYEVTSIQGALDNNERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAVYTHEPEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDENLMEKIEKHFSTRVTEVQLRNVDDYKCALKEAGLLQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2882 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 467 - -
Prci1g2882 500 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Prci1g2882 500 SMART helicmild6 356 449 IPR001650 -
Prci1g2882 500 CDD SF2_C_DEAD 314 458 - -
Prci1g2882 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Prci1g2882 500 Gene3D - 70 308 IPR027417 -
Prci1g2882 500 Pfam Helicase conserved C-terminal domain 337 449 IPR001650 -
Prci1g2882 500 MobiDBLite consensus disorder prediction 1 56 - -
Prci1g2882 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 489 IPR001650 -
Prci1g2882 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 466 IPR027417 -
Prci1g2882 500 CDD DEADc_DDX19_DDX25 98 297 - -
Prci1g2882 500 MobiDBLite consensus disorder prediction 17 32 - -
Prci1g2882 500 Gene3D - 311 493 IPR027417 -
Prci1g2882 500 MobiDBLite consensus disorder prediction 64 83 - -
Prci1g2882 500 MobiDBLite consensus disorder prediction 40 54 - -
Prci1g2882 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
Prci1g2882 500 SMART ultradead3 111 317 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2882 Prci-Chr1 47525896 47531381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2882 92 481 Eukaryotic Initiation Factors Gene Family AT1G72730 36.181 1.18e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2882 K18655 - qsa:O6P43_010208 742.651