Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2878 ATGAACAGCAACAATGCCGCCGCTGATGGCCAAGGCAACCTTGGTTACTTTGTGAACCCTCTCATTATCTCCGGCGCCGGCATCATCTGCTCTTGTGTGGCCTTAGCGACGTACCACTTCATCCTCTTCAGGCTTTGCCTTCAAGGCCGACGACAATTGCGGCAAATAGCTCAGCCAATGAGCCCCCCTCCTGATGACATTCCCTGCGGCGTCGACCCTGAGATCCTCAAGAAAATCCCTATTCTGCCTTACTCTCACAAGAAAGATGACGCCTTTCGTCTGGACCAGACCGAGTGCGCTATTTGCTTAGGCGAATTGCAGGACGGAGAAAAGGTTCGATTATTGCCTTCTTGCAGTCACGCTTTTCACGTACCTTGTATCGATCTCTGGTTCACTCAAAATTCCAATTGTCCCATTTGTCGAGCGCCATTAGTCATTGCCCCTGCGGCTTCAGAAGATCATGTTGCTGATGCTGAGGAAAGGCAGTCTCATCAACGTGATCATGATCATAAGATTGCTGCTTCTGGTTCCACGTCACGAGCCCCTCGTGCTGCTTCCACGATTCGGCATTCTCTCTCTGTGGCGTATCATCACGCGCAGGAAAATCCTCATCAGGGTTCCATGATGGGGTTGAAGAGGTCTCTGTCCATGGATCATTCGTCGTTTGTTTCTGTCAGCATACAGAGGGATGAGGAAAATAAAGCTTCTGCTTCTTCTTCTTCCTCGCCCCCTGTCGCTACAGGAATTGGGATTGCGCATGCTAAAGCGCTTGATCAGGTATCGTCCATGTTGATGATGTCTTTCGCGCAGTTTCGGAATAGTAGAAATGAAAGATCGAAAGGCATTCTACCCAATTGA 858 0.4977 MNSNNAAADGQGNLGYFVNPLIISGAGIICSCVALATYHFILFRLCLQGRRQLRQIAQPMSPPPDDIPCGVDPEILKKIPILPYSHKKDDAFRLDQTECAICLGELQDGEKVRLLPSCSHAFHVPCIDLWFTQNSNCPICRAPLVIAPAASEDHVADAEERQSHQRDHDHKIAASGSTSRAPRAASTIRHSLSVAYHHAQENPHQGSMMGLKRSLSMDHSSFVSVSIQRDEENKASASSSSSPPVATGIGIAHAKALDQVSSMLMMSFAQFRNSRNERSKGILPN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2878 285 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Prci1g2878 285 CDD RING-H2_EL5-like 98 141 - -
Prci1g2878 285 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 165 IPR044675 -
Prci1g2878 285 SMART ring_2 99 140 IPR001841 -
Prci1g2878 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
Prci1g2878 285 MobiDBLite consensus disorder prediction 222 245 - -
Prci1g2878 285 Pfam Ring finger domain 98 141 IPR001841 -
Prci1g2878 285 MobiDBLite consensus disorder prediction 153 184 - -
Prci1g2878 285 SUPERFAMILY RING/U-box 91 147 - -
Prci1g2878 285 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2878 Prci-Chr1 47492734 47493776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2878 21 169 C3H Transcription Factor Family AT1G04360 29.878 2.29e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2878 - - pcin:129292926 564.688