Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2868 ATGAAGCAAGAATCGGAATCTGAGATTTCTCTGGAGATTCAGTCTCTAAATCAATGTGATCAAGTCGCTCCTACTCCATCTTCAGAAATTGATGCTGGTTCAGAGTCTCAGTTGATGTTTTCCGTGCACGTGTCTGAGAATCCCGGTGGTATAGTGAAAAGTTCTGCTGTAAATGGTTATGTTGTTTATACCCGAACAAAGTCGTCTCGGCATTTGTGTGATGGGTCTCCTGCAAACCGGTCTCTTAAGAGACACAAGACCTCTGAACATCGGGAACCAAATGCAGACCTTCCAGCTGTTGGTGGCGTCGATGAAGTAGAGTTTCTTGCCGGGGAAGGTGGCTCCAATGAGGTTCCTGCGGAGCATTTTAACAACAGCGAGGTACAGAAAAATGTAGATAAAACAGTGAGGCGGTTTACGCGATCGGCATTGAAACCAAAGGTTGAACGCAGTGATAAGACGGGGACTGCTCCAGAAGCTGCTCAAACAGCAAATAATAGACCAGATGAGAAAGAGACCGCCTCTCTAAGTGCGCCAACAATTCCGCATAGTAAGTTGGAACTAAAAATGTCCAAGAAGATTGTGCTCAGCAAGAAGCCTATAACGGTCAAGGAACTCTTCGATTCTGGTTTACTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGGCTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCACAAGGTTATTCCACCTTCCCAATTCGAGGTTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGTGGAACTCCGCTGCATACATTGGAGACGACAATTCAAAATTTTGTTTGTTCTCCACCCCAAGAAAAATATCTTACGTGTAAAAGGTGCAAAGGATGTTTTTCCTCTTTACGAGTGGGAAAAGTACGGCCTATATGTAGAACTTGTGTTGAATCAAAGGAATCTGAAGGCAGTTTGCTTGGTGTGGTGGGTAAAAGAGTCAGGACAACAAATCGGGTTAGTAGCTCAAAGTCTTCCGAGACTGCATCTGTGCCTATCCTATCACGAAAGAAGTCTCTGCAGAAGTTGAAGAAGTCAACAAAATTTTCAGTAAAACTAAAGACCCCACTAATTTCATCAAACTCAGAGTGTTTATCTTCACAAAATAAGAGTCAATGGAAGATCACTAAAAAGGATCAGCGGTTGCATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACGGAAGTTGCTTATTATGGACATGGGCAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATACTTTGTCGGTGTTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCCGGCTGGGCTTCTCGCAGGAAACCTTATGCGTACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCTATTTCTCTTTCAAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTCTGTCAAGCATTCCGCGAGGCGACTGGTACTGTAAGTTTTGCCGAAACATGTTCCAGAGGGAAAGATTTGTAGAACACAATGCCAATGCTGTAGCTGCTGGAAGGGTTGATGGGGTTGATCCTATTGAACAAATAACCAAGAGATGCATTCGCATTGTCAAAGGCATTGACGCTGAGCTGTGTGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACAATTATACTCTGCGACCAGTGTGAGAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCGGAAGGAAATTGGTTTTGTTGCACGGATTGCAGCAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGGATGTTATGAGGACAAAGCAAGAGGAAAAATGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGGCTTATTAATGGCAAACTTGCTTCTCCTGAAACGAGGCCATTGCTGTCAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTAATCCCAGCCATGGTTTACGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATATTATCGGTCGATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCAGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTACTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCGTTGTTGAACGTAAAGAATCTTGTGCTGCCAGCTGCTGAAGAGGCAGAATCCATATGGACAGATAAATTTGGGTTCGACAGGATGAAACCGGAGCAGATTAGCAGCTATAGAAATAACTACAGCCAGATGGTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTTTGAAATCTTCAATATGAAAGATGAAAATTCCTAG 2649 0.4371 MKQESESEISLEIQSLNQCDQVAPTPSSEIDAGSESQLMFSVHVSENPGGIVKSSAVNGYVVYTRTKSSRHLCDGSPANRSLKRHKTSEHREPNADLPAVGGVDEVEFLAGEGGSNEVPAEHFNNSEVQKNVDKTVRRFTRSALKPKVERSDKTGTAPEAAQTANNRPDEKETASLSAPTIPHSKLELKMSKKIVLSKKPITVKELFDSGLLDGVSVVYMGGKASGLRGVITDGGILCSCCLCNGHKVIPPSQFEVHACKSYRRAAQYICFENGKSLLELLRACSGTPLHTLETTIQNFVCSPPQEKYLTCKRCKGCFSSLRVGKVRPICRTCVESKESEGSLLGVVGKRVRTTNRVSSSKSSETASVPILSRKKSLQKLKKSTKFSVKLKTPLISSNSECLSSQNKSQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGHGQKLLEGYKKGFGILCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCRNMFQRERFVEHNANAVAAGRVDGVDPIEQITKRCIRIVKGIDAELCGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCSRIHSTLQKFLVRGAEKLPDSLVDVMRTKQEEKCLQSFNDIDVRWRLINGKLASPETRPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEFGGMYCAILSVDSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLNVKNLVLPAAEEAESIWTDKFGFDRMKPEQISSYRNNYSQMVTFQGTSMLQKMVPPFEIFNMKDENS 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2868 882 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 757 841 IPR016181 -
Prci1g2868 882 MobiDBLite consensus disorder prediction 77 93 - -
Prci1g2868 882 SUPERFAMILY FYVE/PHD zinc finger 596 659 IPR011011 -
Prci1g2868 882 SMART PHD_3 601 658 IPR001965 -
Prci1g2868 882 SMART PHD_3 513 554 IPR001965 -
Prci1g2868 882 MobiDBLite consensus disorder prediction 1 32 - -
Prci1g2868 882 ProSiteProfiles Zinc finger PHD-type profile. 511 556 IPR019787 -
Prci1g2868 882 Pfam Tify domain binding domain 229 284 IPR032308 -
Prci1g2868 882 Pfam Tify domain binding domain 447 497 IPR032308 -
Prci1g2868 882 MobiDBLite consensus disorder prediction 68 98 - -
Prci1g2868 882 MobiDBLite consensus disorder prediction 143 181 - -
Prci1g2868 882 ProSitePatterns Zinc finger PHD-type signature. 514 553 IPR019786 -
Prci1g2868 882 SUPERFAMILY FYVE/PHD zinc finger 502 558 IPR011011 -
Prci1g2868 882 MobiDBLite consensus disorder prediction 8 32 - -
Prci1g2868 882 Pfam PHD-finger 514 555 IPR019787 -
Prci1g2868 882 CDD PHD1_AIRE 513 553 - -
Prci1g2868 882 PANTHER AUTOIMMUNE REGULATOR 84 868 - -
Prci1g2868 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 660 IPR013083 -
Prci1g2868 882 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 500 577 - -
Prci1g2868 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 583 IPR013083 -
Prci1g2868 882 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2868 Prci-Chr1 47381301 47393847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2868 192 876 PHD Transcription Factor Family AT2G36720 54.446 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g2868 TDBD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2868 - - pcin:129313599 1751.1