Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2867 ATGAAGCAAGAATCGGAATCTGAGATTTCTCTGGAGATTCAGTCTCTAAATCAATGTGATCAAGTCGCTCCTACTCCATCTTCAGAAATTGATGCTGGTTCAGAGTCTCAGTTGATGTTTTCCGTGCACGTGTCTGAGAATCCCGGTGGTATAGTGAAAAGTTCTGCTGTAAATGGTTATGTTGTTTATACCCGAACAAAGTCGTCTCGGCATTTGTGTGATGGGTCTCCTGCAAACCGGTCTCTTAAGAGACACAAGACCTCTGAACATCGGGAACCAAATGCAGACCTTCCAGCTGTTGGTGGCGTCGATGAAGTAGAGGTGAACAAAAAAAGTTTCGAATATGAAGTCGTTTGCCATTTCGAAAGGCGTATTAAGTGTAGTGAATTAAAGAACGAGCCCATGCAGTTTCTTGCCGGGGAAGGTGGCTCCAATGAGGTTCCTGCGGAGCATTTTAACAACAGCGAGGTACAGAAAAATGTAGATAAAACAGTGAGGCGGTTTACGCGATCGGCATTGAAACCAAAGGTTGAACGCAGTGATAAGACGGGGACTGCTCCAGAAGCTGCTCAAACAGCAAATAATAGACCAGATGAGAAAGAGACCGCCTCTCTAAGTGCGCCAACAATTCCGCATAGTAAGTTGGAACTAAAAATGTCCAAGAAGATTGTGCTCAGCAAGAAGCCTATAACGGTCAAGGAACTCTTCGATTCTGGTTTACTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGGCTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCACAAGGTTATTCCACCTTCCCAATTCGAGGTTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGTGGAACTCCGCTGCATACATTGGAGACGACAATTCAAAATTTTGTTTGTTCTCCACCCCAAGAAAAATATCTTACGTGTAAAAGGTGCAAAGGATGTTTTTCCTCTTTACGAGTGGGAAAAGTACGGCCTATATGTAGAACTTGTGTTGAATCAAAGGAATCTGAAGGCAGTTTGCTTGGTGTGGTGGGTAAAAGAGTCAGGACAACAAATCGGGTTAGTAGCTCAAAGTCTTCCGAGACTGCATCTGTGCCTATCCTATCACGAAAGAAGTCTCTGCAGAAGTTGAAGAAGTCAACAAAATTTTCAGTAAAACTAAAGACCCCACTAATTTCATCAAACTCAGAGTGTTTATCTTCACAAAATAAGAGTCAATGGAAGATCACTAAAAAGGATCAGCGGTTGCATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACGGAAGTTGCTTATTATGGACATGGGCAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATACTTTGTCGGTGTTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCCGGCTGGGCTTCTCGCAGGAAACCTTATGCGTACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCTATTTCTCTTTCAAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTCTGTCAAGCATTCCGCGAGGCGACTGGTACTGTAAGTTTTGCCGAAACATGTTCCAGAGGGAAAGATTTGTAGAACACAATGCCAATGCTGTAGCTGCTGGAAGGGTTGATGGGGTTGATCCTATTGAACAAATAACCAAGAGATGCATTCGCATTGTCAAAGGCATTGACGCTGAGCTGTGTGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACAATTATACTCTGCGACCAGTGTGAGAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCGGAAGGAAATTGGTTTTGTTGCACGGATTGCAGCAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGGATGTTATGAGGACAAAGCAAGAGGAAAAATGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGGCTTATTAATGGCAAACTTGCTTCTCCTGAAACGAGGCCATTGCTGTCAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTAATCCCAGCCATGGTTTACGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATATTATCGGTCGATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCAGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTACTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCGTTGTTGAACGTAAAGAATCTTGTGCTGCCAGCTGCTGAAGAGGCAGAATCCATATGGACAGATAAATTTGGGTTCGACAGGATGAAACCGGAGCAGATTAGCAGCTATAGAAATAACTACAGCCAGATGGTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTTTGAAATCTTCAATATGAAAGATGAAAATTCCTAG 2736 0.4353 MKQESESEISLEIQSLNQCDQVAPTPSSEIDAGSESQLMFSVHVSENPGGIVKSSAVNGYVVYTRTKSSRHLCDGSPANRSLKRHKTSEHREPNADLPAVGGVDEVEVNKKSFEYEVVCHFERRIKCSELKNEPMQFLAGEGGSNEVPAEHFNNSEVQKNVDKTVRRFTRSALKPKVERSDKTGTAPEAAQTANNRPDEKETASLSAPTIPHSKLELKMSKKIVLSKKPITVKELFDSGLLDGVSVVYMGGKASGLRGVITDGGILCSCCLCNGHKVIPPSQFEVHACKSYRRAAQYICFENGKSLLELLRACSGTPLHTLETTIQNFVCSPPQEKYLTCKRCKGCFSSLRVGKVRPICRTCVESKESEGSLLGVVGKRVRTTNRVSSSKSSETASVPILSRKKSLQKLKKSTKFSVKLKTPLISSNSECLSSQNKSQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGHGQKLLEGYKKGFGILCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCRNMFQRERFVEHNANAVAAGRVDGVDPIEQITKRCIRIVKGIDAELCGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCSRIHSTLQKFLVRGAEKLPDSLVDVMRTKQEEKCLQSFNDIDVRWRLINGKLASPETRPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEFGGMYCAILSVDSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLNVKNLVLPAAEEAESIWTDKFGFDRMKPEQISSYRNNYSQMVTFQGTSMLQKMVPPFEIFNMKDENS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2867 911 MobiDBLite consensus disorder prediction 70 99 - -
Prci1g2867 911 Pfam Tify domain binding domain 258 313 IPR032308 -
Prci1g2867 911 Pfam Tify domain binding domain 476 526 IPR032308 -
Prci1g2867 911 CDD PHD1_AIRE 542 582 - -
Prci1g2867 911 MobiDBLite consensus disorder prediction 77 93 - -
Prci1g2867 911 Pfam PHD-finger 543 584 IPR019787 -
Prci1g2867 911 SUPERFAMILY FYVE/PHD zinc finger 625 688 IPR011011 -
Prci1g2867 911 MobiDBLite consensus disorder prediction 172 209 - -
Prci1g2867 911 PANTHER AUTOIMMUNE REGULATOR 40 897 - -
Prci1g2867 911 MobiDBLite consensus disorder prediction 1 32 - -
Prci1g2867 911 SUPERFAMILY FYVE/PHD zinc finger 531 587 IPR011011 -
Prci1g2867 911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 612 IPR013083 -
Prci1g2867 911 ProSitePatterns Zinc finger PHD-type signature. 543 582 IPR019786 -
Prci1g2867 911 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 529 606 - -
Prci1g2867 911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 689 IPR013083 -
Prci1g2867 911 MobiDBLite consensus disorder prediction 8 32 - -
Prci1g2867 911 MobiDBLite consensus disorder prediction 185 209 - -
Prci1g2867 911 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 786 870 IPR016181 -
Prci1g2867 911 SMART PHD_3 630 687 IPR001965 -
Prci1g2867 911 SMART PHD_3 542 583 IPR001965 -
Prci1g2867 911 ProSiteProfiles Zinc finger PHD-type profile. 540 585 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2867 Prci-Chr1 47381301 47393847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2867 52 905 PHD Transcription Factor Family AT2G36720 46.541 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g2867 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2867 - - pcin:129313599 1826.99