Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2866 ATGAAGCAAGAATCGGAATCTGAGATTTCTCTGGAGATTCAGTCTCTAAATCAATGTGATCAAGTCGCTCCTACTCCATCTTCAGAAATTGATGCTGGTTCAGAGTCTCAGTTGATGTTTTCCGTGCACGTGTCTGAGAATCCCGGTGGTATAGTGAAAAGTTCTGCTGTAAATGGTTATGTTGTTTATACCCGAACAAAGTCGTCTCGGCATTTGTGTGATGGGTCTCCTGCAAACCGGTCTCTTAAGAGACACAAGACCTCTGAACATCGGGAACCAAATGCAGACCTTCCAGCTGTTGGTGGCGTCGATGAAGTAGAGGTGAACAAAAAAAGTTTCGAATATGAAGTCGTTTGCCATTTCGAAAGGCGTATTAAGTGTAGTGAATTAAAGAACGAGCCCATGCAGTTTCTTGCCGGGGAAGGTGGCTCCAATGAGGTTCCTGCGGAGCATTTTAACAACAGCGAGGTACAGAAAAATGTAGATAAAACAGTGAGGCGGTTTACGCGATCGGCATTGAAACCAAAGGTTGAACGCAGTGATAAGACGGGGACTGCTCCAGAAGCTGCTCAAACAGCAAATAATAGACCAGATGAGAAAGAGACCGCCTCTCTAAGTGCGCCAACAATTCCGCATAGTAAGTTGGAACTAAAAATGTCCAAGAAGATTGTGCTCAGCAAGAAGCCTATAACGGTCAAGGAACTCTTCGATTCTGGTTTACTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGGCTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCACAAGGTTATTCCACCTTCCCAATTCGAGGTTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGTGGAACTCCGCTGCATACATTGGAGACGACAATTCAAAATTTTGTTTGTTCTCCACCCCAAGAAAAATATCTTACGTGTAAAAGGTGCAAAGGATGTTTTTCCTCTTTACGAGTGGGAAAAGTACGGCCTATATGTAGAACTTGTGTTGAATCAAAGGAATCTGAAGGCAGTTTGCTTGGTGTGGTGGGTAAAAGAGTCAGGACAACAAATCGGGTTAGTAGCTCAAAGTCTTCCGAGACTGCATCTGTGCCTATCCTATCACGAAAGAAGTCTCTGCAGAAGTTGAAGAAGTCAACAAAATTTTCAGTAAAACTAAAGACCCCACTAATTTCATCAAACTCAGAGTGTTTATCTTCACAAAATAAGAGTCAATGGAAGATCACTAAAAAGGATCAGCGGTTGCATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACGGAAGTTGCTTATTATGGACATGGGCAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATACTTTGTCGGTGTTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCCGGCTGGGCTTCTCGCAGGAAACCTTATGCGTACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCTATTTCTCTTTCAAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTCTGTCAAGCATTCCGCGAGGCGACTGGTACTGTAAGTTTTGCCGAAACATGTTCCAGAGGGAAAGATTTGTAGAACACAATGCCAATGCTGTAGCTGCTGGAAGGGTTGATGGGGTTGATCCTATTGAACAAATAACCAAGAGATGCATTCGCATTGTCAAAGGCATTGACGCTGAGCTGTGTGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACAATTATACTCTGCGACCAGTGTGAGAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCGGAAGGAAATTGGTTTTGTTGCACGGATTGCAGCAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGGATGTTATGAGGACAAAGCAAGAGGAAAAATGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGGCTTATTAATGGCAAACTTGCTTCTCCTGAAACGAGGCCATTGCTGTCAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTAATCCCAGCCATGGTTTACGGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATATTATCGGTCGATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCAGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTACTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCGTTGTTGAACGTAAAGAATCTTGTGCTGCCAGCTGCTGAAGAGGCAGAATCCATATGGACAGATAAATTTGGGTTCGACAGGATGAAACCGGAGCAGATTAGCAGCTATAGAAATAACTACAGCCAGATGGTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTTTGAAATCTTCAATATGAAAGATGAAAATTCCTAG 2733 0.4354 MKQESESEISLEIQSLNQCDQVAPTPSSEIDAGSESQLMFSVHVSENPGGIVKSSAVNGYVVYTRTKSSRHLCDGSPANRSLKRHKTSEHREPNADLPAVGGVDEVEVNKKSFEYEVVCHFERRIKCSELKNEPMQFLAGEGGSNEVPAEHFNNSEVQKNVDKTVRRFTRSALKPKVERSDKTGTAPEAAQTANNRPDEKETASLSAPTIPHSKLELKMSKKIVLSKKPITVKELFDSGLLDGVSVVYMGGKASGLRGVITDGGILCSCCLCNGHKVIPPSQFEVHACKSYRRAAQYICFENGKSLLELLRACSGTPLHTLETTIQNFVCSPPQEKYLTCKRCKGCFSSLRVGKVRPICRTCVESKESEGSLLGVVGKRVRTTNRVSSSKSSETASVPILSRKKSLQKLKKSTKFSVKLKTPLISSNSECLSSQNKSQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGHGQKLLEGYKKGFGILCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCRNMFQRERFVEHNANAVAAGRVDGVDPIEQITKRCIRIVKGIDAELCGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCSRIHSTLQKFLVRGAEKLPDSLVDVMRTKQEEKCLQSFNDIDVRWRLINGKLASPETRPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVYGNVRSQEFGGMYCAILSVDSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLNVKNLVLPAAEEAESIWTDKFGFDRMKPEQISSYRNNYSQMVTFQGTSMLQKMVPPFEIFNMKDENS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2866 910 MobiDBLite consensus disorder prediction 70 99 - -
Prci1g2866 910 Pfam Tify domain binding domain 258 313 IPR032308 -
Prci1g2866 910 Pfam Tify domain binding domain 476 526 IPR032308 -
Prci1g2866 910 CDD PHD1_AIRE 542 582 - -
Prci1g2866 910 MobiDBLite consensus disorder prediction 77 93 - -
Prci1g2866 910 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 778 869 IPR016181 -
Prci1g2866 910 SUPERFAMILY FYVE/PHD zinc finger 625 688 IPR011011 -
Prci1g2866 910 MobiDBLite consensus disorder prediction 172 209 - -
Prci1g2866 910 MobiDBLite consensus disorder prediction 1 32 - -
Prci1g2866 910 PANTHER AUTOIMMUNE REGULATOR 40 896 - -
Prci1g2866 910 SUPERFAMILY FYVE/PHD zinc finger 531 587 IPR011011 -
Prci1g2866 910 ProSitePatterns Zinc finger PHD-type signature. 543 582 IPR019786 -
Prci1g2866 910 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 529 606 - -
Prci1g2866 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 689 IPR013083 -
Prci1g2866 910 MobiDBLite consensus disorder prediction 185 209 - -
Prci1g2866 910 MobiDBLite consensus disorder prediction 8 32 - -
Prci1g2866 910 Pfam PHD-finger 543 584 IPR019787 -
Prci1g2866 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 612 IPR013083 -
Prci1g2866 910 SMART PHD_3 630 687 IPR001965 -
Prci1g2866 910 SMART PHD_3 542 583 IPR001965 -
Prci1g2866 910 ProSiteProfiles Zinc finger PHD-type profile. 540 585 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2866 Prci-Chr1 47381301 47393848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2866 52 904 PHD Transcription Factor Family AT2G36720 46.541 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g2866 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2866 - - pcin:129313599 1820.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2866 1 47381301 47393848 Prci3g2949 3 41107970 41115400 CCT
Prci3g3644 3 45877161 45882085 Prci1g2866 1 47381301 47393848 CCT