Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2843 ATGGATCGAGACTGGGGTTCAAAGCCTGGGAGTGGAGGAGCCGCCTCCGCTCAGAATGAAGCCATCGACCGTCGAGAGCGTCTTCGCCGACTTGCCCTGGAGACCATTGATCTTGCTAAAGACCCATATTTCATGCGCAACCATCTTGGGAGCTATGAGTGCAAGCTTTGTCTCACCTTACACAATAACGAGGGCAATTACTTGGCCCACACTCAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAACGTAAAGTCTCGGTTCGCAAGTCAGTCAAGATTGGTCGGCCTGGGTACCGAGTGACTAAGCAATTTGATCCAGAGACAAAGCAGAGATCTCTTCTTTTCCAGATAGAATATCCTGAGATTGAAGAACTCACAAAGCCAAGGCATAGATTTATGTCTTCATATGAGCAGAGGGTTCAACCATTTGACAAAAGATATCAGTATCTTTTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTCAAGGTTCCCAGCACAGAGATTGACAAGTCCACACCAAAGTTTTTCTCACATTGGGACCCAGACTCAAAAATGTTCACGTTGCAGTTATATTTCAAACCCAAGCCACCAGAGGCTAACAAACCACAGCCTCCCTCTACAACCAATGGCACTGCAGCACCTGGGGCCCCACCAAGGCCTGTGCCTCCACCACCTCAAGCTCCACCGCCACCACCACCTCCACCACAAGGACTACCTCCTGGTGCTGCTGTCGGAAATCCTCCTAGAGCCCCTCCACCTCCAATGCCTGGATCATTGCTGCTGCCGCCGCCTCCTCCAATGTCAAATGGCCCTGCACCTGCACCTCCTGGCGGAATGCCACCGCAACCCCTAGTTGCAGCTGGCCCAGCAGCTAGTTTCAGCATGGGTTCTAGGCCCCCTTCAATGCCACCTCCTCAAAATTATTTAGCCCAACGTCCACCCCCACCACCTCCAAGCATGGGATAG 1020 0.5216 MDRDWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKPKPPEANKPQPPSTTNGTAAPGAPPRPVPPPPQAPPPPPPPPQGLPPGAAVGNPPRAPPPPMPGSLLLPPPPPMSNGPAPAPPGGMPPQPLVAAGPAASFSMGSRPPSMPPPQNYLAQRPPPPPPSMG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2843 339 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Prci1g2843 339 Gene3D - 93 218 - -
Prci1g2843 339 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Prci1g2843 339 SMART CactinC_cactus_3 89 217 - -
Prci1g2843 339 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 324 - -
Prci1g2843 339 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Prci1g2843 339 Pfam Zinc-finger of C2H2 type 52 76 - -
Prci1g2843 339 MobiDBLite consensus disorder prediction 233 301 - -
Prci1g2843 339 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Prci1g2843 339 Gene3D Classic Zinc Finger 46 89 - -
Prci1g2843 339 MobiDBLite consensus disorder prediction 1 21 - -
Prci1g2843 339 MobiDBLite consensus disorder prediction 212 339 - -
Prci1g2843 339 MobiDBLite consensus disorder prediction 316 339 - -
Prci1g2843 339 FunFam Splicing factor 3a subunit 2 94 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2843 Prci-Chr1 47204418 47208883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2843 1 228 C2H2 Transcription Factor Family AT2G32600 87.719 2.68e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2843 K12826 - mof:131167275 417.927