Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2839 ATGGCGGTTCCTGGGAGGCGCAATGGTCTTGACGACGACGACGACGACAACTTCGAAGATGACAACGCCCTCTTTGAAGAAAATGGCCTGGTGGAGCTTGATGAATCGGATACGCCTCCTCATCTCCGCGACCTAGCCACGGCCTCCCAGTCTGGTGACGTCCACAATCTCCGCCGAGCTCTAGATAACTTGACTGGAAGCATTGACGAGCCTGTGGAAGATGGGGATACGGCTCTACATCTGACCTGCTTATATGGCCATTTATCGTGTGTCCAGCTACTTCTGGATAGAGGAGCAAACATGGAATCTAAGGATGAAGATGGTGCAATTCCATTGCATGATGCTTGTGCAGGAGGTGATATGTAGTTATTTTCCAAGTGTTATCCACTGCTACTTAACAGAGCTGATAATGCAGAGCATATAAGGAGGATGCTTGAATCAGTTGATTCAGAGGGTGATACACCGCTCCATCACGCTGCTAGAGGCGAGCATGTTGATGTCGTTAGGTTATTGCTGTCTCATGGTGCATCTCCCACGAAGACAAACTTATATGGAAAGATCCCAGCAGAATTACTTGATCACAGCACAGACGCTGGGAGATTGCTGGAAGCTGCTGGTGCTACTTCCCTACCACCTCACTAG 642 0.4938 MAVPGRRNGLDDDDDDNFEDDNALFEENGLVELDESDTPPHLRDLATASQSGDVHNLRRALDNLTGSIDEPVEDGDTALHLTCLYGHLSCVQLLLDRGANMESKDEDGAIPLHDACAGGDMXLFSKCYPLLLNRADNAEHIRRMLESVDSEGDTPLHHAARGEHVDVVRLLLSHGASPTKTNLYGKIPAELLDHSTDAGRLLEAAGATSLPPH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2839 213 MobiDBLite consensus disorder prediction 1 49 - -
Prci1g2839 213 SUPERFAMILY Ankyrin repeat 45 191 IPR036770 -
Prci1g2839 213 Pfam Ankyrin repeats (3 copies) 108 182 IPR002110 GO:0005515
Prci1g2839 213 ProSiteProfiles Ankyrin repeat region circular profile. 151 177 - -
Prci1g2839 213 PRINTS Ankyrin repeat signature 167 181 IPR002110 GO:0005515
Prci1g2839 213 PRINTS Ankyrin repeat signature 75 90 IPR002110 GO:0005515
Prci1g2839 213 Gene3D - 115 204 IPR036770 -
Prci1g2839 213 Gene3D - 37 114 IPR036770 -
Prci1g2839 213 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Prci1g2839 213 FunFam BRCA1-associated RING domain protein 1 39 209 - -
Prci1g2839 213 MobiDBLite consensus disorder prediction 13 33 - -
Prci1g2839 213 SMART ANK_2a 151 180 IPR002110 GO:0005515
Prci1g2839 213 SMART ANK_2a 74 103 IPR002110 GO:0005515
Prci1g2839 213 SMART ANK_2a 107 136 IPR002110 GO:0005515
Prci1g2839 213 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Prci1g2839 213 ProSiteProfiles Ankyrin repeat region circular profile. 74 106 - -
Prci1g2839 213 PANTHER SOWAH (DROSOPHILA) HOMOLOG 39 207 - -
Prci1g2839 213 Pfam Ankyrin repeat 74 105 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2839 Prci-Chr1 47187514 47191365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2839 69 194 Ion Channels AT4G32500 27.397 2.36e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2839 - - qsa:O6P43_006603 301.982