Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2838 ATGGAGGTCACAGGCCAGGAAATTGTGGTGTGGAATAAGGATCAAGCCCAAGTCATGAAGGGCAAGCGCACCAAGCGTTCGAGGCTACCTTCCCCAATCAGGCTATCCGTGGCTTCTTCTTCTTCCAGCGCAGGAAGAACCAGCACCGAGGACAATTCAGGTGGATCATCATCGGTTGTAGATATGGCCACCGCCTCAACTGATCAATTGAGGGTGAGCACAGAAGAAGAGGACATGGCCAACTGTTTGATCCTCCTGGCTCAAGGCCATACACCTGAGCCCTCTTGCCACATCAACAATAATAACAACGATAAGGCTTCCTCGGGGCTATACCTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCGTTCCAAGCGCTCGGTGGACACAGAGCCAGCCACAAGAAACCGAAGCCAAACAATAATTCTGAAGAAAAGCTGCCATCAGTTACTTTTGCCAAGGAGGATGGTCATGACCCCTATGGTCCCACCACAGATTTCGTCCTCTCGTTGCAGATATCAAATAGGGCTTCGCATAGCGGCGGCAGTAACACTAATAAGTCGAAAGTTCACGAGTGTTCTATATGTGGAGCTGAGTTCACTTCTGGGCAAGCCTTGGGGGGTCACATGAGGCGCCACAGGACTTTAGTGAACAATTCTGCGACGTGCACGACGACGAGCACGGGGAATAATTCTGAACTCCAGGAAGCCAACAAACCCAAAAATGTTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGATGATCACAGAGAAGCCAAGTTGACTTTTCAGTCTAAAGAAAATGTTCTGGTTTTCTCTGCATCTTCTTTGGTGGATTGCCATTATTGA 855 0.4865 MEVTGQEIVVWNKDQAQVMKGKRTKRSRLPSPIRLSVASSSSSAGRTSTEDNSGGSSSVVDMATASTDQLRVSTEEEDMANCLILLAQGHTPEPSCHINNNNNDKASSGLYLYQCKTCDRCFPSFQALGGHRASHKKPKPNNNSEEKLPSVTFAKEDGHDPYGPTTDFVLSLQISNRASHSGGSNTNKSKVHECSICGAEFTSGQALGGHMRRHRTLVNNSATCTTTSTGNNSELQEANKPKNVLKLDLNLPAPEDDHREAKLTFQSKENVLVFSASSLVDCHY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2838 284 SUPERFAMILY beta-beta-alpha zinc fingers 112 214 IPR036236 -
Prci1g2838 284 PANTHER ZINC FINGER PROTEIN ZAT5 64 265 - -
Prci1g2838 284 MobiDBLite consensus disorder prediction 19 61 - -
Prci1g2838 284 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Prci1g2838 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 214 IPR013087 -
Prci1g2838 284 Pfam C2H2-type zinc finger 113 138 - -
Prci1g2838 284 Pfam C2H2-type zinc finger 191 215 - -
Prci1g2838 284 Gene3D Classic Zinc Finger 111 214 - -
Prci1g2838 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Prci1g2838 284 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Prci1g2838 284 SMART c2h2final6 113 135 IPR013087 -
Prci1g2838 284 SMART c2h2final6 192 214 IPR013087 -
Prci1g2838 284 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2838 Prci-Chr1 47184117 47185466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2838 18 284 C2H2 Transcription Factor Family AT5G03510 45.486 9.53e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g2838 zf-C2H2_6 1.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2838 - - dzi:111295159 274.633