Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2837 ATGATGGAGTGCATTGTCGAGCCGCAGATTTCAGCCCATGGAATTTCTCATCTAGATGACGGCTCTCTTTCTGAGACAGGATATGGCCGTTACGGGTGTTCACACTATAGAAGGAGATGCAAGATAGTAGCACCTTGTTGCAATGAAGTCTTTGATTGCAGACATTGCCATAATGAATCCAAGAATTCGATTGAATTGGACCCTGTTGATCGCCACGACCTTCCTCGTCACGATTTAAAGAGAGTTATCTGTTCCTTGTGTAGCACCGAGCAAGATGTTCAGCAGATGTGCATTCAGTGCGGTGTTTGCATGGGGAAGTACTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGTATCGAAGAATCAGTACCATTGCAATGAATGTGGCATCTGCAGAATTGGAGGCAAGGAGAATTTTTTCCACTGCAACAAATGCGGATGTTGCTATTCGACATTGTTGAAAGATTCACACCGTTGCGTGGAAAAAGCTATGCATCACGATTGTCCGGTTTGCTTTGAGTTTCTTTTTGATACCACAAAAGACATTACTGTATTGCCGTGTGGTCACTCTATTCATCTGGAATGTGTGAAAGAAATGGGGAGGCATTTCCAGTATTCTTGTCCTGTTTGCTCAAAATCTATCTGTGACATGTCCCGTGTGTGGGAGAGACTGGATCATGAGGTTGCATCGACACCTATGCCAGAAATATATCAAAATAAGATGGTTTGGATTCTGTGCAATGATTGTGGGGAAACATCGGAGGTGACCTTTCACGTTTTGGCGCATAAGTGTATAAAATGCAAATCCTACAACACCAGACAGACGCAAGGTGGACCTGCATCGTGCTCATCCAACATTGAAGAAGTGCGTCAATGA 879 0.4369 MMECIVEPQISAHGISHLDDGSLSETGYGRYGCSHYRRRCKIVAPCCNEVFDCRHCHNESKNSIELDPVDRHDLPRHDLKRVICSLCSTEQDVQQMCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGKENFFHCNKCGCCYSTLLKDSHRCVEKAMHHDCPVCFEFLFDTTKDITVLPCGHSIHLECVKEMGRHFQYSCPVCSKSICDMSRVWERLDHEVASTPMPEIYQNKMVWILCNDCGETSEVTFHVLAHKCIKCKSYNTRQTQGGPASCSSNIEEVRQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2837 292 Pfam Ring finger domain 168 211 IPR001841 -
Prci1g2837 292 Pfam CHY zinc finger 33 114 IPR008913 GO:0008270
Prci1g2837 292 Gene3D - 240 284 - -
Prci1g2837 292 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 277 - -
Prci1g2837 292 SMART ring_2 169 211 IPR001841 -
Prci1g2837 292 SUPERFAMILY Zinc hairpin stack 105 162 IPR037275 -
Prci1g2837 292 MobiDBLite consensus disorder prediction 273 292 - -
Prci1g2837 292 ProSiteProfiles Zinc finger CHY-type profile. 26 102 IPR008913 GO:0008270
Prci1g2837 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 214 IPR013083 -
Prci1g2837 292 ProSiteProfiles Zinc finger RING-type profile. 169 212 IPR001841 -
Prci1g2837 292 ProSiteProfiles Zinc finger CTCHY-type profile. 104 168 IPR017921 -
Prci1g2837 292 Pfam Zinc-ribbon 216 274 IPR039512 -
Prci1g2837 292 SUPERFAMILY RING/U-box 168 218 - -
Prci1g2837 292 FunFam RING finger and CHY zinc finger domain-containing protein 1 240 285 - -
Prci1g2837 292 SUPERFAMILY CHY zinc finger-like 29 104 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2837 Prci-Chr1 47139665 47142709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2837 31 286 C2H2 Transcription Factor Family AT3G18290 39.773 1.55e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2837 K10144 - mnt:21405387 541.191