Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2834 ATGCTCCAACTAATCTGCATTGCTCTGTTCTTTCTGGTGTCGTTCTCACCGCTTGGGAGAGCAATGCTGAACCTCACTCTTCCTGGCCAGCATCCCGACCCCGATTCTGTCGTTCGAGAATTTCACAGGAAAGTGAATGCTTCAATTGTGAGAAGGAAAATGCTAGCAGAGTCGCAGATACAAGAGCCGTCGTGTTTAACAGGGAACCCAATTGACGATTGCTGGAAATGCGACCCAGATTGGCCCAATAACAGGCAGAGGTTAGCTGAATGCGCCATTGGGTTCGGTCAGTACGCCAAGGGAGGCCAGGGTGGCGAATTCTACATCGTCACCGACTCCTCTGACGACGACGCCGTGAACCCGAAACCTGGTACTCTCAGATACGCCGTGATTCAGACGCAGCCACTGTGGATTGTGTTTCCCAGTAATATGATGATTAAATTGTCTCAGGAGCTCATCTTCAATAGCCACAAAACTATCGATGGCCGTGGGGCTGACGTTCATATTGTGGGCGGTGGCTGCATCACTCTCCAGTATATTAGCAATGTCATCATTCACAACGTTCACATCCACCATTGTCATCCCTCAGGGGAGGCTAACGTGCGGTCGAGCCCAGATCACTACGGGTGGCGAACGGAATCGGACGGCGACGGGATATCGATATTCGGGTCGAAAGACATATGGATCGACCACTGCACGCTGTCCCGGTGCAGGGACGGGTTGATCGACGCGGTTATGGGTTCCACGGGCATCACCATTTCCAACAACTACTTCTCGCATCACAACGAGGTGATGCTGCTGGGCCACAGCGACGAGTACCAGCCGGACTCCGGCATGCAGGTTACCATCGCCTTCAATCACTTCGGCGAGCAGCTGGTGCAGAGGATGCCGAGGTGCCGGAAGGGATACATCCATGTCGTCAACAACGACTACACGCACTGGGAGATGTACGCGATCGGAGGCAGCGGAAACCCTACGATCAACAGCCAGGGGAATCGGTACACGGCGCCAACGAATCCGTTCGCGAAGGAGGTGACCAAGAGAGTGGACACGGAGGAAGGGAAGTGGAAGGGGTGGAACTGGAGATCGGAAGGGGACGTAATGGTAAACGGAGCATTCTTCGTGGCTTCCGGCGAAGGCGTGGAGGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCTAAGTCGGCCGATCACATTGATTTCCTCGTAATGCACGCCGGTGTGCTCGGCATTTCCAGGGATAACAACCTGGGGATGTGGAGCAGAGGGCCGAACGGAGAAGGGGATGAGATAACAGTGACAGGACCTGAATACACGGACGACATGGCGAGGACGACGAGGTTGCTGCCGGAGTCTTATGCTGTGGGTGGGATATGGTGTTTAGTAGCATTCTTGTGGGCGGTGTTATGTGAATTGTGA 1419 0.5426 MLQLICIALFFLVSFSPLGRAMLNLTLPGQHPDPDSVVREFHRKVNASIVRRKMLAESQIQEPSCLTGNPIDDCWKCDPDWPNNRQRLAECAIGFGQYAKGGQGGEFYIVTDSSDDDAVNPKPGTLRYAVIQTQPLWIVFPSNMMIKLSQELIFNSHKTIDGRGADVHIVGGGCITLQYISNVIIHNVHIHHCHPSGEANVRSSPDHYGWRTESDGDGISIFGSKDIWIDHCTLSRCRDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDEYQPDSGMQVTIAFNHFGEQLVQRMPRCRKGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVDTEEGKWKGWNWRSEGDVMVNGAFFVASGEGVEVKYEKAYSVEPKSADHIDFLVMHAGVLGISRDNNLGMWSRGPNGEGDEITVTGPEYTDDMARTTRLLPESYAVGGIWCLVAFLWAVLCEL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2834 472 SMART amb_all 143 340 IPR002022 -
Prci1g2834 472 FunFam Pectate lyase 68 410 - -
Prci1g2834 472 PANTHER PECTATE LYASE 18-RELATED 29 412 IPR045032 GO:0030570
Prci1g2834 472 Gene3D - 68 410 IPR012334 -
Prci1g2834 472 Pfam Pectate lyase 151 332 IPR002022 -
Prci1g2834 472 SUPERFAMILY Pectin lyase-like 63 397 IPR011050 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Prci1g2834 472 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2834 Prci-Chr1 47104139 47107022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2834 1 448 Polysaccharide Lyase AT3G53190 73.478 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2834 K01728 - gmx:100775595 770