Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2818 ATGGGTAGAGCTCCTTGCTGCGACAAGGCAAATGTAAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCACAGCTGAAGGAGTACATAGACAAGCATGGGACTGGAGGCAATTGGATTGCCCTCCCTCAAAAAGCTGGTCTCAAAAGATGTGGGAAAAGCTGTAGGCTAAGATGGCTCAACTATCTCCGACCCAACATCAAACACGGCGAGTTCTCCGATCATGAAGATAGGATCATCTGCAGCCTCTTTGCCAGCATCGGAAGCAGGTGGTCAGTGATAGCATCTCATCTGCCTGGAAGAACTGATAACGATATTAAGAACTACTGGAACACCAAGCTTAAGAAGAAGATGATGATAATGAATCCTTCAGCTCATCACCAAGCCACCGTTTTACCGGTTCTCCAAACTTCAACGCCATCTTCATCCTCGTCATCAGCATCTTCACCATTATCATTCACAGAAAGCACCAACTCTTACTGCCACCCTCCTTGTGCTTCTTCATTCACAGGCGCTGATCAATCCATTTCCTTCTCGTCGGCGAGTTTTTTGAGCGGCCATTCCTCCTGTGCTTCTGCTGGCTCCTTTTATCAAACCCAAGAAAGCTTCATGAGTCCCATCGAGCTAGTCGCAGCTAGTTGTAACTCTTCTAATGGGAGCTATAATAACAGCAGCCAGATGAGCCGTGTGAAAGAATCAGAAGCTGCTGGTTACGGAGTAGATCAAGGAAGTCTTATCCAGGAGATGATAGCTGCCAATAATAACTATGATTATCTGTACAGCATTGGGATGGAAATGGAAGAAACCCAGAAGGTGATGGTGTGTGATGGGGACTACGTGAGTGTTGGCTGGACAGAGAAACAAAATGGACTGTGGCAAGAGAATAATCCACCATTTGATTATGGAATAGAAGAAATTAAGCAGCTAATAAGCTCTAGTAGTGGCAACAACTTTTTGTTTGATGAAAACATGACACAGAAAATGGCCATGTACTACTACTGA 999 0.4515 MGRAPCCDKANVKKGPWSPEEDAQLKEYIDKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDHEDRIICSLFASIGSRWSVIASHLPGRTDNDIKNYWNTKLKKKMMIMNPSAHHQATVLPVLQTSTPSSSSSSASSPLSFTESTNSYCHPPCASSFTGADQSISFSSASFLSGHSSCASAGSFYQTQESFMSPIELVAASCNSSNGSYNNSSQMSRVKESEAAGYGVDQGSLIQEMIAANNNYDYLYSIGMEMEETQKVMVCDGDYVSVGWTEKQNGLWQENNPPFDYGIEEIKQLISSSSGNNFLFDENMTQKMAMYYY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2818 332 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Prci1g2818 332 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci1g2818 332 SMART sant 13 64 IPR001005 -
Prci1g2818 332 SMART sant 67 115 IPR001005 -
Prci1g2818 332 FunFam Transcription factor RAX3 7 68 - -
Prci1g2818 332 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Prci1g2818 332 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci1g2818 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Prci1g2818 332 CDD SANT 16 62 IPR001005 -
Prci1g2818 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Prci1g2818 332 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci1g2818 332 CDD SANT 70 113 IPR001005 -
Prci1g2818 332 PANTHER OS09G0431300 PROTEIN 1 252 - -
Prci1g2818 332 Gene3D - 69 131 - -
Prci1g2818 332 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2818 Prci-Chr1 47007966 47009675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2818 1 130 MYB Transcription Factor Family AT2G36890 79.389 1.06e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g2818 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2818 K09422 - gmx:778084 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2818 1 47007966 47009675 Prci3g2985 3 41458227 41460011 CCT