Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2796 ATGGATCCTGAAGAATACTTACAGAAGTGTTCCAATATGAAATGCCAAAGGGTTCAAGTAGATGGATCATTGGTTCCTGCTATTCAAGACGAATCGATGGAAGTTGAACATTTGCTTGCAGAACCTAGAAACGATCATGTTTCAGTGGATGGTATTTTGTATTTTCATGAGGAGAGTGTAGGCAGATGTGCTGTCGAAAATCTTTCCCATGGATTTGAATTTGGTCTAAGAACAAGCATAGGTGGATCGGATTCTCATACAACTTTGAATGGAAAACATGATTTGAAACTTGAGGTACTTGATGGATTGCTGGATGATGTTGAAATTGATGGTCTTAATGCGACAGATGGGTTTTCATGTGAAGATTATCTTTTGGATTTTGAATATCCTGACCAAGCTGTGGGTCTTTGTGGAGAATTACTACTACAAAGTTCAAGCTCTGAGAGCCATTCTCCAGGATTAAGTGGAAGTAGCAACGGTGTTGGTGGAGTATCTGAATCATCGAAAGTGGCCATTGAACAAATAGAATACAAAAATAATTTTCTAGATGATAGAGTTGCCCATGACTTGCATGGTGCCTTCAGGAACAATTCCTATCAAACATCCATTGAAGATGGAACTTGCAATTCACTTGATATGCAGCATCTAAATGAGTTGGATAATGATACCCCTTTAGCAGATAGTATATTGTCTTGCAAGAAGAAAAAGGGTTCTGTGGACGAATGTCAAATTACTGCAGTTAGAGAGAAGAGATGCCGTAAGCCTACTCTGAGGTATATTGAAGAATTTTCAAATTTAAGGTCAAAAGAAAAGGCTTTGAATTCTGCAACCAAAAATAAACACTCTAGTTTGACATCACATCACAAGCTTCGTCATGTAAGGTTTAGAGCATTGAGACACATTCCATGCAAGAATTCTGGAAGTCAAACAAGTGATATGGCGCTTCCTGAGTTGCAGGATCACAAGCAATGTCTGAAAAGTGAGGAGCTTGAGTATGAAGAGTCTGCATCGGAGTCTGAGGATGAATGCGTGACGCCAAAAAGATATAATAAAAATGATCGGAGGAAGCATCAAAGAATGTGGACTTTATCTGAAGTGATCAAGTTGGTTGATGGTATTTCTGAACATGGAGTTGGGCGATGGACTGATATAAAGCGTCTTCTGTTTTCTTCCTCCAGTTACCGTACACCGATAGATCTCAGGGACAAGTGGCGGAATCTTTTAAGAGCCAGTTCAGCACAGAAATTTAACAACAAAGAGACTGAACAAAAGCAGCAGCATGCCTTGCGTTCGTTGCCAAGTACTGTACTTCGCCGAGTTCGTGAACTGGCTAAAATTCATCCATACCCGAGGGAGCGTTACTCAAAGGAATCATCTGCTGGCCAAGTTGGTTCCTCTGCCCTTCCAATTCAAACTAAATGTGGTCCTAGCAAAAGAAATGTACGTAGGAAGAAGTGTATTTGA 1464 0.4016 MDPEEYLQKCSNMKCQRVQVDGSLVPAIQDESMEVEHLLAEPRNDHVSVDGILYFHEESVGRCAVENLSHGFEFGLRTSIGGSDSHTTLNGKHDLKLEVLDGLLDDVEIDGLNATDGFSCEDYLLDFEYPDQAVGLCGELLLQSSSSESHSPGLSGSSNGVGGVSESSKVAIEQIEYKNNFLDDRVAHDLHGAFRNNSYQTSIEDGTCNSLDMQHLNELDNDTPLADSILSCKKKKGSVDECQITAVREKRCRKPTLRYIEEFSNLRSKEKALNSATKNKHSSLTSHHKLRHVRFRALRHIPCKNSGSQTSDMALPELQDHKQCLKSEELEYEESASESEDECVTPKRYNKNDRRKHQRMWTLSEVIKLVDGISEHGVGRWTDIKRLLFSSSSYRTPIDLRDKWRNLLRASSAQKFNNKETEQKQQHALRSLPSTVLRRVRELAKIHPYPRERYSKESSAGQVGSSALPIQTKCGPSKRNVRRKKCI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2796 487 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 464 - -
Prci1g2796 487 CDD SANT_TRF 359 409 - -
Prci1g2796 487 Gene3D - 347 459 - -
Prci1g2796 487 ProSiteProfiles Myb-like domain profile. 353 408 IPR001005 -
Prci1g2796 487 MobiDBLite consensus disorder prediction 453 487 - -
Prci1g2796 487 MobiDBLite consensus disorder prediction 458 473 - -
Prci1g2796 487 SUPERFAMILY Homeodomain-like 355 439 IPR009057 -
Prci1g2796 487 SMART sant 357 410 IPR001005 -
Prci1g2796 487 Pfam Myb-like DNA-binding domain 361 408 IPR001005 -
Prci1g2796 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 353 412 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2796 Prci-Chr1 46875201 46880224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2796 361 419 Single Myb Histone (SMH) Gene Family AT1G72740 40.984 9.81e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci1g2796 Myb_DNA-binding 4.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2796 - - aprc:113871152 477.248