Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2780 ATGGCTTCTGGTAGATCGAAATCTGTAAGGTTTCAGGATAATATTGATAAAGATATATTGATGGCTAGCATAGAAAGTGCCATGTCGATGTCAGATCATAAGATGAATGCGAGAAACAGGTTGATGCAGAGAAAAGAACTTTCAAGGGTGTTTTCTGAGGATTATGATGCGTCGACAAGAAAGATATTCGATCCCAGGGGACCGAGCGTAAACAGATGGAACAAGATGTTCCTTGTAGCATGTTTGATTTCATTATTTGTGGATCCCTTCTTCTTTTACTTGCCAGAGGCTAAGAAAGACAAGTGCATTGCTATATCTGCTGCACTCGAAGTTTCCCTCACCACAATTCGGTCCATGGTTGATGCATTTTACATCATTCATATATTTATTCGATTTCAAACTGCTTATGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTAGTTATAGACCCTTCAACGATTGCATCAAGGTACCTCCAAAAACACTTCTGGCTTGATCTTCTGGCAGCCCTCCCTCTTCCCCAGGTGTTGATTATAGCTGTAATTCCAAATCTAAGGGGGTCGCAAATGATTGCTTCAAGGCAGATTCTGCGTCTTGTGATCATTTTCCAGTACTTGTTGAGGTTGTGTCACATCTTTCCCCTTTCATCTGAAATAGTTAAAGCAAATGGACTCATGATGGAAAAAGCCTGGGCTGGGGCAGCTTATAACCTTATGCTCTATATGCTAGCAAGTCATGTCTTAGGATCCTCCTGGTACCTCTTGGCAATCGAAAGGCAGGATGAGTGTTGGAAAAAAGCTTGTAATCTTGAGTTCCCATATTGTCACTACCGTTATCTTGATTGTCAAACAAGAAGTGATCCAGTCAGAGCAGCTTGGTTTAGATCAAGCAACCTTTCAACTTTATGTGATAAGAACAGTGATTTCTTTCAGTTTGGTATCTTCGCCGATGCTCTCACTTTGGAAATGGAGGACACAAAATTCTTAAGCCGATATTATTATTGCCTTTGGTGGGGCCTGCGGAATCTCAGCTCTCTGGGACAGAATCTCCTGACCAGCACTCAAGTTGGAGAGATAAATTTTGCTGTGATTATTGCCATTCTTGGCTTGGTGCTTTTTGCACTTCTAATAGGAAACATGCAAACGTACCTGCAATCAACTACTTTGCGACTGGAAGAGTGGAGAATAAGAAGGACAGATACAGAACGATGGATGCATCACAGGCAGTTACCTCGTCACCTGAAGCAAAGTGTGAGACGCCATGAACAATTCAGATGGGTTGCTACGCGAGGAGTTGACGAGGAATCCATTCTTCGAGACCTCCCTGTCGATATCAGACGCGACATCAAACGCCACCTGTGTCTTAACCTCGTTCGACAAGTACCCCTGTTTGATCAGATGGACGAGAGGGTGCTAGACGCGATATGTGAAAGACTGAAGCCTTCTCTATGTACTCAAGGAACGCTCCTAGTTCGCGAAGGAGATCCTGTGACTGAAATGCGCTTTATCATTCGAGGACGCTTAGATTCGTGTACTACCAATGGTGGCAGAAGCGGGTTCTTCAATTGTTGTAGAATCGGACCAGGTGATTTCTGTGGCGAGGAGCTGTTGCCATGGGCTCTGGACCCGCGTCCAAGCGTCGTACTTCCTTCATCAACTCGCACAGTGAAAGCCCTGACTGAAGTGGAAGCTTTCGCTCTCATAGCCGAAGACTTGAAATTTGTGGCAGCTCAGTTCAGGAGGCTACACAGCAAGCAGCTGAGGCACACGTTCAGGTTTCACTCGCATCAATGGAGGGCATGGGCAGCTTGCTTCATCCAGGCGGCTTGGTTTAGATATAAGAGAAGGAAAGAGGCGAGTGAGCTAAATCGTAGGGAGCGTGCAAGGAAGGTGGATGCTAATGAAACTACAACGCATTTCTCTGCACCTTTGCACTTGCAAACTCTAATAAGTTCCAGTGTTGCGATGCATAAAGCGGCCAAGTTGGGAGGCAGCTCGAGGAAAGGTGGAAGCTTGCGATATGGTTCTGAACTTGATATTCTTGGTTCACTGAGGAAGCCTCTTGAACCTGATTTCAGTACTGTTGAAGACTGGTGA 2103 0.4513 MASGRSKSVRFQDNIDKDILMASIESAMSMSDHKMNARNRLMQRKELSRVFSEDYDASTRKIFDPRGPSVNRWNKMFLVACLISLFVDPFFFYLPEAKKDKCIAISAALEVSLTTIRSMVDAFYIIHIFIRFQTAYVAPSSRVFGRGELVIDPSTIASRYLQKHFWLDLLAALPLPQVLIIAVIPNLRGSQMIASRQILRLVIIFQYLLRLCHIFPLSSEIVKANGLMMEKAWAGAAYNLMLYMLASHVLGSSWYLLAIERQDECWKKACNLEFPYCHYRYLDCQTRSDPVRAAWFRSSNLSTLCDKNSDFFQFGIFADALTLEMEDTKFLSRYYYCLWWGLRNLSSLGQNLLTSTQVGEINFAVIIAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTERWMHHRQLPRHLKQSVRRHEQFRWVATRGVDEESILRDLPVDIRRDIKRHLCLNLVRQVPLFDQMDERVLDAICERLKPSLCTQGTLLVREGDPVTEMRFIIRGRLDSCTTNGGRSGFFNCCRIGPGDFCGEELLPWALDPRPSVVLPSSTRTVKALTEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRAWAACFIQAAWFRYKRRKEASELNRRERARKVDANETTTHFSAPLHLQTLISSSVAMHKAAKLGGSSRKGGSLRYGSELDILGSLRKPLEPDFSTVEDW 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2780 700 SMART cnmp_10 465 596 IPR000595 -
Prci1g2780 700 Gene3D Jelly Rolls 463 583 IPR014710 -
Prci1g2780 700 Gene3D Helix hairpin bin 393 456 - -
Prci1g2780 700 FunFam Cyclic nucleotide-gated ion channel 1 463 581 - -
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 334 351 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 428 435 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 360 371 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 378 387 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 PRINTS EAG/ELK/ERG potassium channel family signature 245 255 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci1g2780 700 SUPERFAMILY Voltage-gated potassium channels 64 387 - -
Prci1g2780 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 646 - -
Prci1g2780 700 CDD CAP_ED 465 596 IPR000595 -
Prci1g2780 700 ProSiteProfiles cAMP/cGMP binding motif profile. 465 550 IPR000595 -
Prci1g2780 700 Pfam Ion transport protein 73 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci1g2780 700 Gene3D - 75 389 - -
Prci1g2780 700 SUPERFAMILY cAMP-binding domain-like 395 587 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2780 Prci-Chr1 46773575 46776467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2780 35 696 Ion Channels AT2G28260 64.199 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2780 K05391 - gmx:100815543 1054.28