Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2768 ATGGGTAACATAGGAAGTAGCGGCGCTAACGGCCGTCGGAGAAGCAATAGTAGACGGAGGCATCCGCCGCCGACGTCGCCGCCACCGTTCAGGACGCAGCCAGAAATCGCGTCCAGTCGGTCTGTGCATCCAGCATCTACACCTCACACATCGCAATACCCGAACCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCGCTCCCCATCAGGCTATGCCGGCGCCGTTGCCGGCTCCTCTCGATCACCACCATCGAGCGGGGCCTCATCCACAAACGGACCCATCACGGACGGGTGTAAGTTACCATTGCGGGCCTGCTGCGCCTCCACCCGCACCATATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGGTACTCTAAGGGTTGAACCTGATGAGGAAAATCCTGGGCGGTCCCTTGTTGCTTTCACATTTGATGCCACCGTAGATGGGAGCATTACCATCCTTTTCTTTGGTAAAGAAGATGAAAGCTGCATCCTTACACCAACGAAGCAAAATATTTTAGCCCCTGTAACTGTAAGTTTCCAGCAAGGTCTTGGCCAGCAGTTTAGGCAGCCAACTGGAACTGGTATTGACTTTTCAATATTTGAGGAGTCAGAATTATCAGAAGTGGGTGCAGTAGATGTGTTCCCTCTAGCAGTGAAGGCAGAAGCATCCTATGGTAAACAAGATGAATCGAATGAAAACTTAGCATCTGATAGCAGAAACTCTCAGATAACTCTAGCAGCGTTTGAGAAGGAGAAAGGAGAATTCCGGGTAAAAGTAGTTAAGCAGATCCTATGGATAAATGAAATGAGGTATGAACTGCAAGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGACGAAAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGCCACGAGACACAACTGTTCTTCCCTGCCGACACATGTGCATGTGTAGTGGGTGTGCAAAGGTTTTGAGGTTTCAGACAAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAGGGCCATTATGATAGCCAACCCGAGGAATGA 1095 0.4904 MGNIGSSGANGRRRSNSRRRHPPPTSPPPFRTQPEIASSRSVHPASTPHTSQYPNPSPYFQYPGHYSAPHQAMPAPLPAPLDHHHRAGPHPQTDPSRTGVSYHCGPAAPPPAPYVEHQKAVTIRNDVNVKKGTLRVEPDEENPGRSLVAFTFDATVDGSITILFFGKEDESCILTPTKQNILAPVTVSFQQGLGQQFRQPTGTGIDFSIFEESELSEVGAVDVFPLAVKAEASYGKQDESNENLASDSRNSQITLAAFEKEKGEFRVKVVKQILWINEMRYELQEIYGIGNSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKGHYDSQPEE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2768 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 354 IPR013083 -
Prci1g2768 364 FunFam probable E3 ubiquitin-protein ligase LOG2 290 355 - -
Prci1g2768 364 SMART ring_2 306 344 IPR001841 -
Prci1g2768 364 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Prci1g2768 364 MobiDBLite consensus disorder prediction 1 113 - -
Prci1g2768 364 MobiDBLite consensus disorder prediction 32 58 - -
Prci1g2768 364 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Prci1g2768 364 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Prci1g2768 364 CDD mRING-HC-C3HC5_MGRN1-like 304 345 IPR045195 -
Prci1g2768 364 SUPERFAMILY RING/U-box 305 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2768 Prci-Chr1 46642150 46645623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2768 103 325 C3H Transcription Factor Family AT3G09770 62.009 3.21e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2768 - - jre:108989075 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2768 1 46642150 46645623 Prci1g2768 1 46642150 46645623 ECH